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SCNpilot_expt_300_bf_scaffold_603_curated

Search features with annotation key words

Displaying items 31-60 of 103 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_603_curated_31
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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33148..34023
DNA (876bp) protein (292aa)
Fumarylacetoacetate (FAA) hydrolase n=2 Tax=Alicycliphilus denitrificans RepID=E8TUV9_ALIDB
fumarylacetoacetate (faa) hydrolase
Fumarylacetoacetate (FAA) hydrolase {ECO:0000313|EMBL:AEB85547.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_603_curated_32
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34099..35019
DNA (921bp) protein (307aa)
Alpha/beta hydrolase domain-containing protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TUW0_ALIDB
alpha/beta hydrolase
Alpha/beta hydrolase domain-containing protein {ECO:0000313|EMBL:ADU99369.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_603_curated_33
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35029..35889
DNA (861bp) protein (287aa)
Thioesterase superfamily protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TUW1_ALIDB
4-hydroxybenzoyl-CoA thioesterase
4-hydroxybenzoyl-CoA thioesterase {ECO:0000313|EMBL:AEB85545.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_603_curated_34
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35893..36381)
DNA (489bp) protein (163aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TUW2_ALIDB
hypothetical protein
GlcG protein {ECO:0000313|EMBL:GAO22671.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_603_curated_35
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36499..37146)
DNA (648bp) protein (216aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G884_ALIDK
two component LuxR family transcriptional regulator
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:AEB85543.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_603_curated_36
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37143..37994)
DNA (852bp) protein (284aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
ATP-binding region ATPase domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TUW4_ALIDB
integral membrane sensor signal transduction histidine kinase
SCNpilot_expt_300_bf_scaffold_603_curated_37
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38043..38618)
DNA (576bp) protein (192aa)
ATP-binding region ATPase domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TUW4_ALIDB
integral membrane sensor signal transduction histidine kinase
Integral membrane sensor signal transduction histidine kinase {ECO:0000313|EMBL:GAO22675.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_603_curated_38
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38641..39831)
DNA (1191bp) protein (397aa)
Major facilitator superfamily MFS_1 n=2 Tax=Alicycliphilus denitrificans RepID=E8TUW5_ALIDB
major facilitator superfamily protein; K03449 MFS transporter, CP family, cyanate transporter
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:AEB85541.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_603_curated_39
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39824..40315)
DNA (492bp) protein (164aa)
CMP/dCMP deaminase zinc-binding protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G881_ALIDK
CMP/dCMP deaminase zinc-binding protein
CMP/dCMP deaminase zinc-binding protein {ECO:0000313|EMBL:AEB85540.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_603_curated_40
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40349..40783)
DNA (435bp) protein (145aa)
Folate-binding protein YgfZ n=2 Tax=Alicycliphilus denitrificans RepID=E8TUW7_ALIDB
folate-binding protein YgfZ; K06980
Folate-binding protein YgfZ {ECO:0000313|EMBL:GAO22678.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_603_curated_41
unknown

Not on your lists

41094..41192
DNA (99bp) protein (33aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_603_curated_42
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41293..42288
DNA (996bp) protein (332aa)
Aminodeoxychorismate lyase n=2 Tax=Alicycliphilus denitrificans RepID=E8TUW8_ALIDB
aminodeoxychorismate lyase; K07082 UPF0755 protein
Aminodeoxychorismate lyase {ECO:0000313|EMBL:AEB85538.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_603_curated_43
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

42285..42941
DNA (657bp) protein (219aa)
Thymidylate kinase (EC:2.7.4.9); K00943 dTMP kinase [EC:2.7.4.9]
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Thymidylate kinase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G878_ALIDK
SCNpilot_expt_300_bf_scaffold_603_curated_44
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

42938..43933
DNA (996bp) protein (332aa)
DNA-directed DNA polymerase; K02341 DNA polymerase III subunit delta' [EC:2.7.7.7]
DNA-directed DNA polymerase n=2 Tax=Alicycliphilus denitrificans RepID=E8TUX0_ALIDB
DNA-directed DNA polymerase {ECO:0000313|EMBL:GAO22681.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_603_curated_45
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

43950..44309
DNA (360bp) protein (120aa)
Type IV pilus assembly PilZ n=2 Tax=Alicycliphilus denitrificans RepID=E8TUX1_ALIDB
type IV pilus assembly PilZ; K02676 type IV pilus assembly protein PilZ
Type IV pilus assembly PilZ {ECO:0000313|EMBL:ADU99380.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_603_curated_46
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

44370..45179
DNA (810bp) protein (270aa)
hydrolase, TatD family; K03424 TatD DNase family protein [EC:3.1.21.-]
Hydrolase, TatD family n=2 Tax=Alicycliphilus denitrificans RepID=E8TUX2_ALIDB
Hydrolase, TatD family {ECO:0000313|EMBL:AEB85534.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_603_curated_47
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

45176..45856
DNA (681bp) protein (227aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TUX3_ALIDB
Ankyrin; K06867
Ankyrin {ECO:0000313|EMBL:GAO22684.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_603_curated_48
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

45964..46209
DNA (246bp) protein (82aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TUX4_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAO22685.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_603_curated_49
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

46231..47448
DNA (1218bp) protein (406aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TUX5_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAO22686.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_603_curated_50
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47452..48129)
DNA (678bp) protein (226aa)
GntR domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TUX6_ALIDB
GntR family transcriptional regulator
GntR family transcriptional regulator {ECO:0000313|EMBL:GAO22687.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_603_curated_51
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

48389..49636
DNA (1248bp) protein (416aa)
Major facilitator superfamily MFS_1 n=2 Tax=Alicycliphilus denitrificans RepID=E8TUX7_ALIDB
general substrate transporter
General substrate transporter {ECO:0000313|EMBL:AEB85529.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_603_curated_52
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

49656..50417
DNA (762bp) protein (254aa)
UPF0271 protein Alide_1631 n=2 Tax=Alicycliphilus denitrificans RepID=E8TUX8_ALIDB
lamb/ycsf family protein; K07160 UPF0271 protein
UPF0271 protein ALISP_2509 {ECO:0000256|HAMAP-Rule:MF_00691}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_603_curated_53
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

50440..51252
DNA (813bp) protein (271aa)
UPF0317 protein Alide_1632 n=2 Tax=Alicycliphilus denitrificans RepID=E8TUX9_ALIDB
hypothetical protein
UPF0317 protein Alide2_3186 {ECO:0000256|HAMAP-Rule:MF_01830}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_603_curated_54
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

51267..52868
DNA (1602bp) protein (534aa)
urea amidolyase-like protein (EC:6.3.4.6)
Urea amidolyase related protein {ECO:0000313|EMBL:AEB85526.1}; EC=6.3.4.6 {ECO:0000313|EMBL:AEB85526.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Urea amidolyase related protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TUY0_ALIDB
SCNpilot_expt_300_bf_scaffold_603_curated_55
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

52874..54598
DNA (1725bp) protein (575aa)
carbamoyl-phosphate synthase l chain ATP-binding protein; K11263 acetyl-/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.3.4.14]
Carbamoyl-phosphate synthase L chain ATP-binding protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TUY1_ALIDB
Carbamoyl-phosphate synthase L chain ATP-binding protein {ECO:0000313|EMBL:ADU99390.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_603_curated_56
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(54661..56442)
DNA (1782bp) protein (594aa)
lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA (EC:3.6.3.44); K11085 ATP-binding cassette, subfamily B, bacterial MsbA [EC:3.6.3.-]
Lipid A export ATP-binding/permease protein MsbA {ECO:0000256|HAMAP-Rule:MF_01703}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01703};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA n=2 Tax=Alicycliphilus denitrificans RepID=E8TUY2_ALIDB
SCNpilot_expt_300_bf_scaffold_603_curated_57
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

56576..57898
DNA (1323bp) protein (441aa)
Protein TolB n=2 Tax=Alicycliphilus denitrificans RepID=E8TUY3_ALIDB
tol-pal system beta propeller repeat protein tolb; K03641 TolB protein
Protein TolB {ECO:0000256|HAMAP-Rule:MF_00671}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_603_curated_58
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

57933..58475
DNA (543bp) protein (181aa)
Peptidoglycan-associated lipoprotein n=2 Tax=Alicycliphilus denitrificans RepID=E8TUY4_ALIDB
peptidoglycan-associated lipoprotein; K03640 peptidoglycan-associated lipoprotein
Peptidoglycan-associated lipoprotein {ECO:0000313|EMBL:ADU99393.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_603_curated_59
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

58487..59263
DNA (777bp) protein (259aa)
Tol-pal system protein YbgF n=2 Tax=Alicycliphilus denitrificans RepID=E8TUY5_ALIDB
tol-pal system protein YbgF
Tol-pal system protein YbgF {ECO:0000313|EMBL:ADU99394.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_603_curated_60
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(59206..59949)
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Neisseria sp. oral taxon 020 str. F0370 RepID=L1NPA9_9NEIS
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
Displaying items 31-60 of 103 in total

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