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SCNpilot_expt_300_bf_scaffold_603_curated

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Displaying items 1-30 of 103 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_603_curated_1
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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495..1343
DNA (849bp) protein (283aa)
Transcriptional regulator, AraC family n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6AUS5_DELSC
Helix-turn-helix domain protein {ECO:0000313|EMBL:KFJ14270.1}; TaxID=80866 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (Pseudomonas acidovorans) (Comamonas acidovorans).;"
AraC family transcriptional regulator; K12243 AraC family transcriptional regulator, transcriptional activator of the genes for pyochelin and ferripyochelin receptors
SCNpilot_expt_300_bf_scaffold_603_curated_2
Delftia sp. Cs1-4, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1467..3650
DNA (2184bp) protein (728aa)
TonB-dependent siderophore receptor n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6AUS6_DELSC
TonB-dependent siderophore receptor
TonB-dependent siderophore receptor {ECO:0000313|EMBL:AEF88014.1}; TaxID=742013 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. (strain Cs1-4).;"
SCNpilot_expt_300_bf_scaffold_603_curated_3
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3678..4532
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Pseudomonas fluorescens BBc6R8 RepID=V7EAS1_PSEFL
Uncharacterized protein {ECO:0000313|EMBL:ESW58043.1}; TaxID=463794 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens BBc6R8.;"
PepSY-associated membrane protein
SCNpilot_expt_300_bf_scaffold_603_curated_4
Delftia sp. RIT313, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4623..5744
DNA (1122bp) protein (374aa)
ABC-type transporter, periplasmic subunit n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6AUS7_DELSC
ABC transporter substrate-binding protein; K02016 iron complex transport system substrate-binding protein
ABC-type transporter, periplasmic subunit {ECO:0000313|EMBL:EZP53973.1}; TaxID=1468410 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. RIT313.;"
SCNpilot_expt_300_bf_scaffold_603_curated_5
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5741..6790
DNA (1050bp) protein (350aa)
Iron-chelate uptake ABC transporter, FeCT family, permease protein n=1 Tax=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) RepID=Q4KAX9_PSEF5
FeCT family iron-chelate ABC transporterpermease; K02015 iron complex transport system permease protein
Iron-chelate uptake ABC transporter, FeCT family, permease protein {ECO:0000313|EMBL:AAY92768.1}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
SCNpilot_expt_300_bf_scaffold_603_curated_6
Janthinobacterium lividum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6787..7569
DNA (783bp) protein (261aa)
phosphonate-transporting ATPase (EC:3.6.3.28); K02013 iron complex transport system ATP-binding protein [EC:3.6.3.34]
Putative ABC transport ATP-binding subunit n=1 Tax=Janthinobacterium lividum RepID=A0SZ65_9BURK
Putative ABC transport ATP-binding subunit {ECO:0000313|EMBL:ABK64107.1}; TaxID=29581 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium lividum.;"
SCNpilot_expt_300_bf_scaffold_603_curated_7
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7569..9290
DNA (1722bp) protein (574aa)
Putative ABC transporter fused ATPase and inner membrane components n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZD62_AZOL4
putative ABC transporter; fused ATPase and inner membrane components
Putative ABC transporter fused ATPase and inner membrane components {ECO:0000313|EMBL:CBS89327.1}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
SCNpilot_expt_300_bf_scaffold_603_curated_8
Delftia sp. RIT313, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9287..10945
DNA (1659bp) protein (553aa)
Xenobiotic-transporting ATPase {ECO:0000313|EMBL:EZP53977.1}; EC=3.6.3.44 {ECO:0000313|EMBL:EZP53977.1};; TaxID=1468410 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. RIT313.;"
xenobiotic-transporting ATPase (EC:3.6.3.44)
Xenobiotic-transporting ATPase n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6AUT1_DELSC
SCNpilot_expt_300_bf_scaffold_603_curated_9
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10961..12307)
DNA (1347bp) protein (449aa)
Type I secretion outer membrane protein, TolC family n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TU52_ALIDB
type i secretion outer membrane protein, tolc family; K12340 outer membrane channel protein
Type I secretion outer membrane protein {ECO:0000313|EMBL:GAO22636.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_603_curated_10
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12319..12657)
DNA (339bp) protein (113aa)
Rhodanese domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TU53_ALIDB
Rhodanese-like protein
Rhodanese domain protein {ECO:0000313|EMBL:ADU99338.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_603_curated_11
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12676..13386)
DNA (711bp) protein (237aa)
protein-l-isoaspartate(d-aspartate) o-methyltransferase (EC:2.1.1.77); K00573 protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
Protein-L-isoaspartate(D-aspartate) O-methyltransferase {ECO:0000313|EMBL:ADU99339.1}; EC=2.1.1.77 {ECO:0000313|EMBL:ADU99339.1};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Protein-L-isoaspartate(D-aspartate) O-methyltransferase n=2 Tax=Alicycliphilus denitrificans RepID=E8TU54_ALIDB
SCNpilot_expt_300_bf_scaffold_603_curated_12
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13704..14366)
DNA (663bp) protein (221aa)
Regulatory protein TetR n=2 Tax=Alicycliphilus denitrificans RepID=E8TU55_ALIDB
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:AEB85574.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_603_curated_13
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14515..15063
DNA (549bp) protein (183aa)
peptide methionine sulfoxide reductase (EC:1.8.4.11); K07304 peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
Peptide methionine sulfoxide reductase MsrA n=2 Tax=Alicycliphilus denitrificans RepID=E8TU56_ALIDB
SCNpilot_expt_300_bf_scaffold_603_curated_14
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15088..15471
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TU57_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU99342.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_603_curated_15
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15645..17717
DNA (2073bp) protein (691aa)
TonB-dependent receptor n=2 Tax=Alicycliphilus denitrificans RepID=E8TU58_ALIDB
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein
TonB-dependent receptor {ECO:0000313|EMBL:AEB85572.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_603_curated_16
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18110..18982
DNA (873bp) protein (291aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TU59_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB85571.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_603_curated_17
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19033..20253
DNA (1221bp) protein (407aa)
Chromate transporter, chromate ion transporter (CHR) family n=2 Tax=Alicycliphilus denitrificans RepID=E8TU60_ALIDB
chromate transporter; K07240 chromate transporter
Chromate transporter, chromate ion transporter (CHR) family {ECO:0000313|EMBL:AEB85570.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_603_curated_18
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20385..21323
DNA (939bp) protein (313aa)
Auxin Efflux Carrier n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TU61_ALIDB
auxin efflux carrier; K07088
Auxin Efflux Carrier {ECO:0000313|EMBL:ADU99346.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_603_curated_19
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21324..21977)
DNA (654bp) protein (218aa)
pyridoxamine 5'-phosphate oxidase (EC:1.4.3.5); K00275 pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
Pyridoxine/pyridoxamine 5'-phosphate oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; EC=1.4.3.5 {ECO:0000256|HAMAP-Rule:MF_01629};; PNP/PMP oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; Pyridoxal 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_01629}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Pyridoxine/pyridoxamine 5'-phosphate oxidase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G8A9_ALIDK
SCNpilot_expt_300_bf_scaffold_603_curated_20
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21994..22584)
DNA (591bp) protein (197aa)
ChaC family protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TU63_ALIDB
chac family protein; K07232 cation transport protein ChaC
ChaC family protein {ECO:0000313|EMBL:AEB85567.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_603_curated_21
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22647..23168
DNA (522bp) protein (174aa)
OmpA/MotB domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TU64_ALIDB
OmpA/MotB domain-containing protein
OmpA/MotB domain-containing protein {ECO:0000313|EMBL:GAO22648.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_603_curated_22
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23217..24266)
DNA (1050bp) protein (350aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TUU1_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU99350.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_603_curated_23
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24269..24673)
DNA (405bp) protein (135aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TUU2_ALIDB
hypothetical protein
Ribosomal protein S3AE {ECO:0000313|EMBL:GAO22650.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_603_curated_24
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24766..27150
DNA (2385bp) protein (795aa)
Tex-like protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TUU3_ALIDB
Tex-like protein {ECO:0000313|EMBL:GAO22651.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
tex-like protein; K06959 uncharacterized protein
SCNpilot_expt_300_bf_scaffold_603_curated_25
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27152..28003)
DNA (852bp) protein (284aa)
Citrate synthase; K01647 citrate synthase [EC:2.3.3.1]
Citrate synthase n=2 Tax=Alicycliphilus denitrificans RepID=E8TUV2_ALIDB
Citrate synthase {ECO:0000313|EMBL:ADU99361.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_603_curated_26
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28000..29157)
DNA (1158bp) protein (386aa)
formyl-CoA transferase (EC:2.8.3.16)
L-carnitine dehydratase/bile acid-inducible protein F n=2 Tax=Alicycliphilus denitrificans RepID=E8TUV3_ALIDB
L-carnitine dehydratase/bile acid-inducible protein F {ECO:0000313|EMBL:ADU99362.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_603_curated_27
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29160..30125)
DNA (966bp) protein (322aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000380CCA8
Uncharacterized protein {ECO:0000313|EMBL:GAD24868.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_603_curated_28
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30293..31303)
DNA (1011bp) protein (337aa)
Amidohydrolase 2 n=2 Tax=Alicycliphilus denitrificans RepID=E8TUV6_ALIDB
amidohydrolase
Amidohydrolase 2 {ECO:0000313|EMBL:AEB85550.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_603_curated_29
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31453..32163
DNA (711bp) protein (237aa)
Regulatory protein IclR n=2 Tax=Alicycliphilus denitrificans RepID=E8TUV7_ALIDB
IclR family transcriptional regulator
Transcriptional regulator, IclR family {ECO:0000313|EMBL:AEB85549.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_603_curated_30
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32219..33052
DNA (834bp) protein (278aa)
Metal-dependent hydrolase HDOD n=2 Tax=Alicycliphilus denitrificans RepID=E8TUV8_ALIDB
metal-dependent hydrolase hdod
Metal-dependent hydrolase HDOD {ECO:0000313|EMBL:ADU99367.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Displaying items 1-30 of 103 in total

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