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SCNpilot_expt_300_bf_scaffold_436_curated

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_436_curated_1
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

641..1135
DNA (495bp) protein (165aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TXP3_ALIDB
Membrane protein {ECO:0000313|EMBL:GAO24390.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_436_curated_2
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1253..1819
DNA (567bp) protein (189aa)
deoxycytidine triphosphate deaminase; K01494 dCTP deaminase [EC:3.5.4.13]
Deoxycytidine triphosphate deaminase {ECO:0000256|HAMAP-Rule:MF_00146}; Short=dCTP deaminase {ECO:0000256|HAMAP-Rule:MF_00146};; EC=3.5.4.13 {ECO:0000256|HAMAP-Rule:MF_00146};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Deoxycytidine triphosphate deaminase n=2 Tax=Alicycliphilus denitrificans RepID=E8TXP2_ALIDB
SCNpilot_expt_300_bf_scaffold_436_curated_3
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1884..2747
DNA (864bp) protein (288aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TXP1_ALIDB
hypothetical protein; K07054
Metal loprotease {ECO:0000313|EMBL:GAO24388.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_436_curated_4
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2753..3868)
DNA (1116bp) protein (372aa)
o-succinylbenzoate synthase {ECO:0000256|HAMAP-Rule:MF_01933}; Short=OSB synthase {ECO:0000256|HAMAP-Rule:MF_01933};; Short=OSBS {ECO:0000256|HAMAP-Rule:MF_01933};; EC=4.2.1.113 {ECO:0000256|HAMAP-Rule:MF_01933};; 4-(2'-carboxyphenyl)-4-oxybutyric acid synthase {ECO:0000256|HAMAP-Rule:MF_01933}; o-succinylbenzoic acid synthase {ECO:0000256|HAMAP-Rule:MF_01933}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
mandelate racemase/muconate lactonizing protein; K02549 O-succinylbenzoate synthase [EC:4.2.1.113]
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000374031A
SCNpilot_expt_300_bf_scaffold_436_curated_5
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3868..4851)
DNA (984bp) protein (328aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037A9A1E
Uncharacterized protein {ECO:0000313|EMBL:GAD21562.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_436_curated_6
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5010..5924
DNA (915bp) protein (305aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037C324A
Transcriptional regulator {ECO:0000313|EMBL:GAD21561.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
LysR family transcriptional regulator
SCNpilot_expt_300_bf_scaffold_436_curated_7
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5932..7374
DNA (1443bp) protein (481aa)
DEAD/DEAH box helicase domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TXP0_ALIDB
DEAD/DEAH box helicase domain-containing protein
DEAD/DEAH box helicase domain protein {ECO:0000313|EMBL:AEB83765.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_436_curated_8
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7475..8143)
DNA (669bp) protein (223aa)
NosL family protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GDU9_ALIDK
NosL family protein
NosL family protein {ECO:0000313|EMBL:AEB83766.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_436_curated_9
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8146..8694)
DNA (549bp) protein (183aa)
NosL family protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TXN8_ALIDB
NosL family protein
NosL family protein {ECO:0000313|EMBL:GAO24385.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_436_curated_10
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8691..9515)
DNA (825bp) protein (275aa)
ABC-2 type transporter n=2 Tax=Alicycliphilus denitrificans RepID=E8TXN7_ALIDB
ABC transporter; K01992 ABC-2 type transport system permease protein
ABC-2 type transporter {ECO:0000313|EMBL:AEB83768.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_436_curated_11
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9522..10454)
DNA (933bp) protein (311aa)
sulfate-transporting ATPase (EC:3.6.3.25); K01990 ABC-2 type transport system ATP-binding protein
ABC transporter related protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TXN6_ALIDB
ABC transporter related protein {ECO:0000313|EMBL:ADV00804.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_436_curated_12
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10429..11697)
DNA (1269bp) protein (423aa)
Periplasmic copper-binding protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TXN5_ALIDB
periplasmic copper-binding protein; K07218 nitrous oxidase accessory protein
Parallel beta-helix repeat protein {ECO:0000313|EMBL:AEB83770.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_436_curated_13
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11694..14315)
DNA (2622bp) protein (874aa)
FMN-binding domain protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TXN4_ALIDB
fmn-binding domain protein
FMN-binding domain protein {ECO:0000313|EMBL:ADV00802.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_436_curated_14
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14379..16313)
DNA (1935bp) protein (645aa)
nitrous-oxide reductase (EC:1.7.2.4); K00376 nitrous-oxide reductase [EC:1.7.2.4]
Nitrous-oxide reductase {ECO:0000313|EMBL:ADV00801.1}; EC=1.7.2.4 {ECO:0000313|EMBL:ADV00801.1};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Nitrous-oxide reductase n=2 Tax=Alicycliphilus denitrificans RepID=E8TXN3_ALIDB
SCNpilot_expt_300_bf_scaffold_436_curated_15
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16335..16694)
DNA (360bp) protein (120aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TXN2_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB83773.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_436_curated_16
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16922..17335
DNA (414bp) protein (138aa)
Cytochrome c class I n=2 Tax=Alicycliphilus denitrificans RepID=E8TXN1_ALIDB
cytochrome c class i
Cytochrome c class I {ECO:0000313|EMBL:AEB83774.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_436_curated_17
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17356..18396
DNA (1041bp) protein (347aa)
ApbE family lipoprotein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GDV8_ALIDK
ApbE family lipoprotein {ECO:0000313|EMBL:GAO24377.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
ApbE family lipoprotein; K03734 thiamine biosynthesis lipoprotein
SCNpilot_expt_300_bf_scaffold_436_curated_18
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18498..19343)
DNA (846bp) protein (282aa)
bis(5'-nucleosyl)-tetraphosphatase (symmetrical) (EC:3.6.1.41); K01525 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41]
Bis(5'-nucleosyl)-tetraphosphatase, symmetrical {ECO:0000256|HAMAP-Rule:MF_00199, ECO:0000256|SAAS:SAAS00088338}; EC=3.6.1.41 {ECO:0000256|HAMAP-Rule:MF_00199, ECO:0000256|SAAS:SAAS00088330};; Ap4A hydrolase {ECO:0000256|HAMAP-Rule:MF_00199}; Diadenosine 5',5'''-P1,P4-tetraphosphate pyrophosphohydrolase {ECO:0000256|HAMAP-Rule:MF_00199}; Diadenosine tetraphosphatase {ECO:0000256|HAMAP-Rule:MF_00199}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycl
Bis(5'-nucleosyl)-tetraphosphatase, symmetrical n=2 Tax=Alicycliphilus denitrificans RepID=E8TXM9_ALIDB
SCNpilot_expt_300_bf_scaffold_436_curated_19
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19659..19955
DNA (297bp) protein (99aa)
Histone family protein nucleoid-structuring protein H-NS n=2 Tax=Alicycliphilus denitrificans RepID=E8TXM8_ALIDB
histone family protein nucleoid-structuring protein h-ns; K03746 DNA-binding protein H-NS
Histone family protein nucleoid-structuring protein H-NS {ECO:0000313|EMBL:AEB83777.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_436_curated_20
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20228..23134
DNA (2907bp) protein (969aa)
aconitate hydratase 1 (EC:4.2.1.3); K01681 aconitate hydratase 1 [EC:4.2.1.3]
Aconitate hydratase 1 {ECO:0000313|EMBL:AEB83778.1}; EC=4.2.1.3 {ECO:0000313|EMBL:AEB83778.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Aconitate hydratase 1 n=2 Tax=Alicycliphilus denitrificans RepID=E8TXM7_ALIDB
SCNpilot_expt_300_bf_scaffold_436_curated_21
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23157..24377
DNA (1221bp) protein (407aa)
FAD-dependent oxidoreductase; K00480 salicylate hydroxylase [EC:1.14.13.1]
FAD dependent oxidoreductase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TXM6_ALIDB
FAD dependent oxidoreductase {ECO:0000313|EMBL:ADV00794.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_436_curated_22
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24429..25667)
DNA (1239bp) protein (413aa)
Major facilitator superfamily MFS_1 n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TXM5_ALIDB
major facilitator superfamily mfs_1
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ADV00793.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_436_curated_23
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25693..25836)
DNA (144bp) protein (48aa)
Major facilitator superfamily MFS_1 n=2 Tax=Alicycliphilus denitrificans RepID=E8TXM4_ALIDB
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:AEB83781.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Displaying 23 items

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