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SCNpilot_expt_300_bf_scaffold_276_curated

Search features with annotation key words

Displaying items 121-150 of 286 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_276_curated_121
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

130395..131231
DNA (837bp) protein (279aa)
Redoxin domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U0J4_ALIDB
Redoxin domain-containing protein
Redoxin domain-containing protein {ECO:0000313|EMBL:GAO23454.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_276_curated_122
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(131239..131826)
DNA (588bp) protein (196aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U0J3_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB84745.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_276_curated_123
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(131918..132697)
DNA (780bp) protein (260aa)
ATP-binding region ATPase domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U0J2_ALIDB
integral membrane sensor signal transduction histidine kinase
Integral membrane sensor signal transduction histidine kinase {ECO:0000313|EMBL:GAO23456.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_276_curated_124
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(132815..133609)
DNA (795bp) protein (265aa)
Regulatory protein LuxR n=2 Tax=Alicycliphilus denitrificans RepID=E8U0J1_ALIDB
two component LuxR family transcriptional regulator
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:AEB84743.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_276_curated_125
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

133873..134271
DNA (399bp) protein (133aa)
peptidylprolyl isomerase (EC:5.2.1.8); K03772 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GC83_ALIDK
SCNpilot_expt_300_bf_scaffold_276_curated_126
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

134320..136488
DNA (2169bp) protein (723aa)
PAS sensor protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8U0I9_ALIDB
pas sensor protein
PAS sensor protein {ECO:0000313|EMBL:ADU99924.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_276_curated_127
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

136478..137155
DNA (678bp) protein (226aa)
pseudouridine synthase; K06177 tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
Pseudouridine synthase n=2 Tax=Alicycliphilus denitrificans RepID=E8U0I8_ALIDB
Pseudouridine synthase {ECO:0000313|EMBL:AEB84740.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_276_curated_128
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

137189..137959
DNA (771bp) protein (257aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GC80_ALIDK
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:AEB84739.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_276_curated_129
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

138068..139252
DNA (1185bp) protein (395aa)
acetyl-CoA acetyltransferase (EC:2.3.1.9); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:ADU99921.1}; EC=2.3.1.9 {ECO:0000313|EMBL:ADU99921.1};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Acetyl-CoA acetyltransferase n=2 Tax=Alicycliphilus denitrificans RepID=E8U0I6_ALIDB
SCNpilot_expt_300_bf_scaffold_276_curated_130
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

139372..140349
DNA (978bp) protein (326aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U0I5_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB84737.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_276_curated_131
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

140462..140974
DNA (513bp) protein (171aa)
Hemerythrin-like metal-binding protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GC77_ALIDK
hemerythrin-like metal-binding protein; K07216 hemerythrin
Hemerythrin-like metal-binding protein {ECO:0000313|EMBL:AEB84736.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_276_curated_132
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(141037..141477)
DNA (441bp) protein (147aa)
Universal stress protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U0I3_ALIDB
uspa domain-containing protein
Universal stress protein {ECO:0000256|PIRNR:PIRNR006276}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_276_curated_133
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(141572..142321)
DNA (750bp) protein (250aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8U0I2_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAO23468.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_276_curated_134
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(142346..142804)
DNA (459bp) protein (153aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=F4GC74_ALIDK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB84733.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_276_curated_135
unknown

Not on your lists

143001..143192
DNA (192bp) protein (64aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_276_curated_136
Ralstonia sp. PBA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

143224..144402
DNA (1179bp) protein (393aa)
metal-dependent amidase/aminoacylase/carboxypeptidase (EC:3.5.1.-); K01451 hippurate hydrolase [EC:3.5.1.32]
Metal-dependent amidase/aminoacylase/carboxypeptidase n=1 Tax=Ralstonia sp. PBA RepID=I9KR61_9RALS
Metal-dependent amidase/aminoacylase/carboxypeptidase {ECO:0000313|EMBL:EIZ02665.1}; TaxID=795666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. PBA.;"
SCNpilot_expt_300_bf_scaffold_276_curated_137
Achromobacter sp. RTa, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

144456..145445
DNA (990bp) protein (330aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI0003670E9B
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGD93868.1}; TaxID=1532557 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter sp. RTa.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_276_curated_138
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

146017..147024
DNA (1008bp) protein (336aa)
d-isomer specific 2-hydroxyacid dehydrogenase nad-binding protein; K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]
Phosphoglycerate dehydrogenase {ECO:0000313|EMBL:AEB84732.1}; EC=1.1.1.95 {ECO:0000313|EMBL:AEB84732.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U0H9_ALIDB
SCNpilot_expt_300_bf_scaffold_276_curated_139
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(147122..148255)
DNA (1134bp) protein (378aa)
Extracellular ligand-binding receptor n=2 Tax=Alicycliphilus denitrificans RepID=E8U0H8_ALIDB
ABC transporter substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein
Extracellular ligand-binding receptor {ECO:0000313|EMBL:ADU99913.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_276_curated_140
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(148384..148788)
DNA (405bp) protein (135aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U0H7_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB84730.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_276_curated_141
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(148788..149252)
DNA (465bp) protein (155aa)
DNA polymerase III subunit chi HolC; K02339 DNA polymerase III subunit chi [EC:2.7.7.7]
DNA polymerase III chi subunit HolC n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GBF3_ALIDK
DNA polymerase III chi subunit HolC {ECO:0000313|EMBL:AEB84729.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_276_curated_142
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(149252..150745)
DNA (1494bp) protein (498aa)
peptidase M17 leucyl aminopeptidase domain-containing protein; K01255 leucyl aminopeptidase [EC:3.4.11.1]
Probable cytosol aminopeptidase n=2 Tax=Alicycliphilus denitrificans RepID=E8U0H5_ALIDB
Probable cytosol aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; Leucine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; Leucyl aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_276_curated_143
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

150769..151863
DNA (1095bp) protein (365aa)
Permease YjgP/YjgQ family protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U0H4_ALIDB
permease yjgp/yjgq family protein; K07091 lipopolysaccharide export system permease protein
Permease YjgP/YjgQ family protein {ECO:0000313|EMBL:AEB84727.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_276_curated_144
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

151860..152972
DNA (1113bp) protein (371aa)
Permease YjgP/YjgQ family protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GBF0_ALIDK
permease YjgP/YjgQ family protein; K11720 lipopolysaccharide export system permease protein
Permease YjgP/YjgQ family protein {ECO:0000313|EMBL:AEB84726.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_276_curated_145
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

153006..153386
DNA (381bp) protein (127aa)
cobalamin (vitamin B12) biosynthesis CbiX protein; K03795 sirohydrochlorin cobaltochelatase [EC:4.99.1.3]
Cobalamin (Vitamin B12) biosynthesis CbiX protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U0H2_ALIDB
Cobalamin biosynthesis CbiX protein {ECO:0000313|EMBL:GAO23479.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_276_curated_146
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

153430..154371
DNA (942bp) protein (314aa)
LysR substrate-binding protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U0H1_ALIDB
LysR family transcriptional regulator; K13634 LysR family transcriptional regulator, cys regulon transcriptional activator
LysR substrate-binding protein {ECO:0000313|EMBL:ADU99906.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_276_curated_147
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

154514..155665
DNA (1152bp) protein (384aa)
Kynurenine--oxoglutarate transaminase (EC:2.6.1.7); K14287 methionine aminotransferase [EC:2.6.1.-]
Aminotransferase class I and II n=2 Tax=Alicycliphilus denitrificans RepID=E8U0H0_ALIDB
Aminotransferase class I and II {ECO:0000313|EMBL:ADU99905.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_276_curated_148
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(155778..156779)
DNA (1002bp) protein (334aa)
MFS transporter n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QK61_RALPI
Cupriavidus basilensis strain 4G11 chromosome main, complete sequence {ECO:0000313|EMBL:AJG18207.1}; TaxID=68895 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis.;"
tctC; extracytoplasmic binding receptor
SCNpilot_expt_300_bf_scaffold_276_curated_149
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(156844..158019)
DNA (1176bp) protein (392aa)
FMN-dependent dehydrogenase family protein 1 n=1 Tax=Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001) RepID=I3UHX7_ADVKW
FMN-dependent dehydrogenase family protein 1
FMN-dependent dehydrogenase family protein 1 {ECO:0000313|EMBL:AFK64615.1}; TaxID=1036672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001); (Tetrathiobacter kashmirensis).;"
SCNpilot_expt_300_bf_scaffold_276_curated_150
Achromobacter insuavis, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(158016..158978)
DNA (963bp) protein (321aa)
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein n=1 Tax=Achromobacter xylosoxidans AXX-A RepID=F7T7U6_ALCXX
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein {ECO:0000313|EMBL:EGP43596.1}; TaxID=1003200 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter insuavis AXX-A.;"
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein
Displaying items 121-150 of 286 in total

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