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SCNpilot_expt_300_bf_scaffold_276_curated

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Displaying items 1-30 of 286 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_276_curated_1
Thauera sp. 27, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..1761
DNA (1761bp) protein (587aa)
trimethylamine-N-oxide reductase (EC:1.7.2.3); K07812 trimethylamine-N-oxide reductase (cytochrome c) 2 [EC:1.7.2.3]
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI00038055FB
Trimethylamine-N-oxide reductase {ECO:0000313|EMBL:ENO82211.1}; TaxID=305700 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 27.;"
SCNpilot_expt_300_bf_scaffold_276_curated_2

Not on your lists

comp(2386..2703)
DNA (318bp) protein (106aa)
Plasmid stabilization system protein n=1 Tax=uncultured bacterium RepID=K2EGX6_9BACT
Plasmid stabilization system protein {ECO:0000313|EMBL:EKD97694.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
plasmid stabilization system protein
SCNpilot_expt_300_bf_scaffold_276_curated_3
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2700..3017)
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12D93_POLSJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE43499.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
SCNpilot_expt_300_bf_scaffold_276_curated_4
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3086..3424)
DNA (339bp) protein (113aa)
Regulatory protein ArsR n=2 Tax=Alicycliphilus denitrificans RepID=E8U1Q2_ALIDB
regulatory protein ArsR; K03892 ArsR family transcriptional regulator
Regulatory protein ArsR {ECO:0000313|EMBL:AEB84858.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_276_curated_5
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3524..4564
DNA (1041bp) protein (347aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8U1Q1_ALIDB
efflux transporter, rnd family, mfp subunit
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:ADV00040.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_276_curated_6
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4741..7977
DNA (3237bp) protein (1079aa)
Acriflavin resistance protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U1Q0_ALIDB
acriflavin resistance protein
Acriflavin resistance protein {ECO:0000313|EMBL:ADV00039.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_276_curated_7
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7974..9395
DNA (1422bp) protein (474aa)
Outer membrane efflux protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U1P9_ALIDB
outer membrane efflux protein; K12340 outer membrane channel protein
Outer membrane efflux protein {ECO:0000313|EMBL:GAO23263.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_276_curated_8
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9466..10080
DNA (615bp) protein (205aa)
tehB; tellurite resistance protein TehB id=5082927 bin=GWF1_Burkholderiales_GWF1_66_17 species=Rhodospirillum centenum genus=Rhodospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
tehB; tellurite resistance protein TehB
Tax=BJP_08E140C01_Burkholderiales_65_30
SCNpilot_expt_300_bf_scaffold_276_curated_9
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10077..11219
DNA (1143bp) protein (381aa)
fad-dependent pyridine nucleotide-disulfide oxidoreductase id=12551786 bin=BDI species=Alicycliphilus denitrificans genus=Alicycliphilus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
fad-dependent pyridine nucleotide-disulfide oxidoreductase
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_expt_300_bf_scaffold_276_curated_10
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11270..12394
DNA (1125bp) protein (375aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003805CCE
Uncharacterized protein {ECO:0000313|EMBL:GAD22106.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
SCNpilot_expt_300_bf_scaffold_276_curated_11
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12337..12558
DNA (222bp) protein (74aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003805CCE
Uncharacterized protein {ECO:0000313|EMBL:GAD22106.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
SCNpilot_expt_300_bf_scaffold_276_curated_12
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12586..12927
DNA (342bp) protein (114aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036AC2BF
Uncharacterized protein {ECO:0000313|EMBL:GAD22105.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
SCNpilot_expt_300_bf_scaffold_276_curated_13
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12969..13178
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8U1P6_ALIDB
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
SCNpilot_expt_300_bf_scaffold_276_curated_14
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13264..13557
DNA (294bp) protein (98aa)
Rhodanese domain protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8U1P5_ALIDB
rhodanese domain protein
Rhodanese domain protein {ECO:0000313|EMBL:ADV00034.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_276_curated_15
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13554..14000
DNA (447bp) protein (149aa)
OsmC family protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8U1P4_ALIDB
osmc family protein
OsmC family protein {ECO:0000313|EMBL:ADV00033.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_276_curated_16
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14002..14973)
DNA (972bp) protein (324aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U1P3_ALIDB
hypothetical protein; K07795 putative tricarboxylic transport membrane protein
Uncharacterized protein {ECO:0000313|EMBL:GAO23269.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_276_curated_17
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14970..16358)
DNA (1389bp) protein (463aa)
integral membrane sensor signal transduction histidine kinase; K07649 two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Two-component sensor kinase domain-containing protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U1P2_ALIDB
SCNpilot_expt_300_bf_scaffold_276_curated_18
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16324..17004)
DNA (681bp) protein (227aa)
Response regulator receiver n=2 Tax=Alicycliphilus denitrificans RepID=E8U1P1_ALIDB
response regulator receiver; K07774 two-component system, OmpR family, response regulator TctD
Response regulator receiver {ECO:0000313|EMBL:ADV00030.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_276_curated_19
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17126..18133
DNA (1008bp) protein (336aa)
Twin-arginine translocation pathway signal n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GD87_ALIDK
twin-arginine translocation pathway signal protein
Twin-arginine translocation pathway signal {ECO:0000313|EMBL:AEB84846.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_276_curated_20
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18188..19273)
DNA (1086bp) protein (362aa)
biotin synthase (EC:2.8.1.6); K01012 biotin synthetase [EC:2.8.1.6]
Biotin synthase {ECO:0000256|HAMAP-Rule:MF_01694, ECO:0000256|SAAS:SAAS00009987}; EC=2.8.1.6 {ECO:0000256|HAMAP-Rule:MF_01694, ECO:0000256|SAAS:SAAS00250466};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Biotin synthase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GD86_ALIDK
SCNpilot_expt_300_bf_scaffold_276_curated_21
Burkholderia fungorum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19747..20733
DNA (987bp) protein (329aa)
hypothetical protein n=1 Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=UPI00036BC8B9
Uncharacterized protein {ECO:0000313|EMBL:AJZ64175.1}; TaxID=134537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia fungorum.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_276_curated_22
Burkholderia fungorum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20739..22184
DNA (1446bp) protein (482aa)
aldehyde dehydrogenase; K00154 coniferyl-aldehyde dehydrogenase [EC:1.2.1.68]
Aldehyde dehydrogenase n=2 Tax=Burkholderia cenocepacia RepID=A0KC60_BURCH
Aldehyde dehydrogenase {ECO:0000256|PIRNR:PIRNR036492}; TaxID=134537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia fungorum.;"
SCNpilot_expt_300_bf_scaffold_276_curated_23
Burkholderia fungorum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22181..23263
DNA (1083bp) protein (361aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. GM30 RepID=J3FGN0_9PSED
Saccharopine dehydrogenase family protein {ECO:0000313|EMBL:AJZ62167.1}; TaxID=134537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia fungorum.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_276_curated_24
Burkholderia fungorum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23370..24302)
DNA (933bp) protein (311aa)
UPI0003D3B5EA related cluster n=1 Tax=unknown RepID=UPI0003D3B5EA
NAD dependent epimerase/dehydratase family protein {ECO:0000313|EMBL:AJZ61193.1}; TaxID=134537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia fungorum.;"
NAD-dependent epimerase/dehydratase
SCNpilot_expt_300_bf_scaffold_276_curated_25
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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24400..24846
DNA (447bp) protein (149aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000375C672
MerR family transcriptional regulator
Transcriptional regulator, MerR family {ECO:0000313|EMBL:ACY33655.1}; TaxID=688245 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (strain CNB-2).;"
SCNpilot_expt_300_bf_scaffold_276_curated_26
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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24912..25604
DNA (693bp) protein (231aa)
Putative protease n=1 Tax=Pseudomonas sp. (strain M1) RepID=L1HMN9_PSEUO
Dimethyl sulfoxide reductase {ECO:0000313|EMBL:AKC85862.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
ThiJ/PfpI family protein
SCNpilot_expt_300_bf_scaffold_276_curated_27
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25659..26120)
DNA (462bp) protein (154aa)
lactoylglutathione lyase; K01759 lactoylglutathione lyase [EC:4.4.1.5]
Lactoylglutathione lyase n=2 Tax=Alicycliphilus denitrificans RepID=E8U1N8_ALIDB
Lactoylglutathione lyase {ECO:0000313|EMBL:GAO23274.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_276_curated_28
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26179..28227)
DNA (2049bp) protein (683aa)
acetyl-CoA carboxylase, biotin carboxylase; K01965 propionyl-CoA carboxylase alpha chain [EC:6.4.1.3]
Acetyl-CoA carboxylase, biotin carboxylase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8U1N7_ALIDB
Acetyl-CoA carboxylase, biotin carboxylase {ECO:0000313|EMBL:ADV00026.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_276_curated_29
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28257..29789)
DNA (1533bp) protein (511aa)
Propionyl-CoA carboxylase (EC:6.4.1.3); K01966 propionyl-CoA carboxylase beta chain [EC:6.4.1.3]
Carboxyl transferase n=2 Tax=Alicycliphilus denitrificans RepID=E8U1N6_ALIDB
Carboxyl transferase {ECO:0000313|EMBL:ADV00025.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_276_curated_30
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29846..30853)
DNA (1008bp) protein (336aa)
LAO/AO transport system ATPase; K07588 LAO/AO transport system kinase [EC:2.7.-.-]
LAO/AO transport system ATPase n=2 Tax=Alicycliphilus denitrificans RepID=E8U1N5_ALIDB
LAO/AO transport system ATPase {ECO:0000313|EMBL:AEB84841.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Displaying items 1-30 of 286 in total

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