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SCNpilot_expt_300_bf_scaffold_276_curated

Search features with annotation key words

Displaying items 31-60 of 286 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_276_curated_31
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30870..31172)
DNA (303bp) protein (101aa)
methylmalonyl-CoA mutase, large subunit (EC:5.4.99.2); K01847 methylmalonyl-CoA mutase [EC:5.4.99.2]
Methylmalonyl-CoA mutase, large subunit n=2 Tax=Alicycliphilus denitrificans RepID=E8U1N4_ALIDB
Methylmalonyl-CoA mutase large subunit {ECO:0000313|EMBL:GAO23278.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_276_curated_32
unknown

Not on your lists

31567..31740
DNA (174bp) protein (58aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_276_curated_33
R_Rhodospirillales_65_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31771..32076
DNA (306bp) protein (102aa)
Tax=RIFCSPLOWO2_01_FULL_Rhodospirillales_65_14_curated
SCNpilot_expt_300_bf_scaffold_276_curated_34
unknown

Not on your lists

32083..32232
DNA (150bp) protein (50aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_276_curated_35
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32303..32869)
DNA (567bp) protein (189aa)
methylmalonyl-CoA mutase, large subunit (EC:5.4.99.2); K01847 methylmalonyl-CoA mutase [EC:5.4.99.2]
Methylmalonyl-CoA mutase, large subunit {ECO:0000313|EMBL:ADV00023.1}; EC=5.4.99.2 {ECO:0000313|EMBL:ADV00023.1};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Methylmalonyl-CoA mutase, large subunit n=2 Tax=Alicycliphilus denitrificans RepID=E8U1N4_ALIDB
SCNpilot_expt_300_bf_scaffold_276_curated_36
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33000..34436
DNA (1437bp) protein (479aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U1N3_ALIDB
XRE family transcriptional regulator
Uncharacterized protein {ECO:0000313|EMBL:ADV00022.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_276_curated_37
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34530..35744
DNA (1215bp) protein (405aa)
formyl-CoA transferase (EC:2.8.3.16)
CoA transferase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003709F35
Formyl-CoA transferase {ECO:0000313|EMBL:GAD22090.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
SCNpilot_expt_300_bf_scaffold_276_curated_38
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36626..37618
DNA (993bp) protein (331aa)
pyruvate carboxyltransferase; K01640 hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
3-hydroxy-3-methylglutaryl-CoA lyase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003657A15
Hydroxymethylglutaryl-CoA lyase {ECO:0000313|EMBL:GAD22054.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
SCNpilot_expt_300_bf_scaffold_276_curated_39
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37632..38267
DNA (636bp) protein (212aa)
GntR domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U180_ALIDB
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:AEB84835.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_276_curated_40
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38394..40229
DNA (1836bp) protein (612aa)
AMP-dependent synthetase/ligase; K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3]
AMP-dependent synthetase and ligase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8U179_ALIDB
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ADV00017.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_276_curated_41
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40226..41341)
DNA (1116bp) protein (372aa)
Saccharopine dehydrogenase n=2 Tax=Alicycliphilus denitrificans RepID=E8U178_ALIDB
saccharopine dehydrogenase
Saccharopine dehydrogenase {ECO:0000313|EMBL:GAO23285.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_276_curated_42
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41457..42563
DNA (1107bp) protein (369aa)
TIM-barrel protein, yjbN family; K05539 tRNA-dihydrouridine synthase A [EC:1.-.-.-]
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
tRNA-dihydrouridine synthase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GD71_ALIDK
SCNpilot_expt_300_bf_scaffold_276_curated_43
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

42624..43682
DNA (1059bp) protein (353aa)
RelA/SpoT domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U174_ALIDB
RelA/SpoT domain-containing protein
RelA/SpoT domain protein {ECO:0000313|EMBL:AEB84829.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_276_curated_44
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

43858..45174
DNA (1317bp) protein (439aa)
polyhydroxyalkanoate depolymerase, intracellular; K05973 poly(3-hydroxybutyrate) depolymerase [EC:3.1.1.75]
Polyhydroxyalkanoate depolymerase, intracellular n=2 Tax=Alicycliphilus denitrificans RepID=E8U173_ALIDB
Polyhydroxyalkanoate depolymerase, intracellular {ECO:0000313|EMBL:AEB84828.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_276_curated_45
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

45188..45871
DNA (684bp) protein (228aa)
Electron transport complex, RnfABCDGE type, B subunit n=2 Tax=Alicycliphilus denitrificans RepID=E8U172_ALIDB
electron transport complex, rnfabcdge type, b subunit; K03616 electron transport complex protein RnfB
Ferredoxin {ECO:0000313|EMBL:GAO23306.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_276_curated_46
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

45963..47165
DNA (1203bp) protein (401aa)
succinyldiaminopimelate transaminase (EC:2.6.1.83); K14267 N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17]
Succinyldiaminopimelate transaminase {ECO:0000313|EMBL:AEB84826.1}; EC=2.6.1.83 {ECO:0000313|EMBL:AEB84826.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Succinyldiaminopimelate transaminase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GD67_ALIDK
SCNpilot_expt_300_bf_scaffold_276_curated_47
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

47173..47997
DNA (825bp) protein (275aa)
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC:2.3.1.117); K00674 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase [EC:2.3.1.117]
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00811, ECO:0000256|SAAS:SAAS00013419}; EC=2.3.1.117 {ECO:0000256|HAMAP-Rule:MF_00811, ECO:0000256|SAAS:SAAS00013404};; Tetrahydrodipicolinate N-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00811}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase n=2 Tax=Alicycliphilus denitrificans RepID=E8U170_ALIDB
SCNpilot_expt_300_bf_scaffold_276_curated_48
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

48060..49223
DNA (1164bp) protein (388aa)
Twitching motility protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U169_ALIDB
twitching motility protein; K02670 twitching motility protein PilU
Twitching motility protein {ECO:0000313|EMBL:AEB84824.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_276_curated_49
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

49247..50425
DNA (1179bp) protein (393aa)
succinyl-diaminopimelate desuccinylase; K01439 succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
Succinyl-diaminopimelate desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690, ECO:0000256|SAAS:SAAS00082783}; Short=SDAP desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690};; EC=3.5.1.18 {ECO:0000256|HAMAP-Rule:MF_01690, ECO:0000256|SAAS:SAAS00082783};; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase {ECO:0000256|HAMAP-Rule:MF_01690}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
Succinyl-diaminopimelate desuccinylase n=2 Tax=Alicycliphilus denitrificans RepID=E8U168_ALIDB
SCNpilot_expt_300_bf_scaffold_276_curated_50
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

50422..51333
DNA (912bp) protein (304aa)
protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific (EC:2.1.1.72); K07320 putative adenine-specific DNA-methyltransferase [EC:2.1.1.72]
Protein-(Glutamine-N5) methyltransferase, ribosomal protein L3-specific n=2 Tax=Alicycliphilus denitrificans RepID=E8U167_ALIDB
Methyltransferase {ECO:0000313|EMBL:GAO23311.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_276_curated_51
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

51330..52988
DNA (1659bp) protein (553aa)
ABC transporter related protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8U162_ALIDB
ABC transporter; K06158 ATP-binding cassette, subfamily F, member 3
ABC transporter ATPase {ECO:0000313|EMBL:GAO23316.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_276_curated_52
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(53599..54336)
DNA (738bp) protein (246aa)
acetoacetyl-CoA reductase; K00023 acetoacetyl-CoA reductase [EC:1.1.1.36]
Acetoacetyl-CoA reductase n=2 Tax=Alicycliphilus denitrificans RepID=E8U161_ALIDB
Acetoacetyl-CoA reductase {ECO:0000313|EMBL:ADU99998.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_276_curated_53
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(54496..55674)
DNA (1179bp) protein (393aa)
acetyl-CoA acetyltransferase (EC:2.3.1.9); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:AEB84815.1}; EC=2.3.1.9 {ECO:0000313|EMBL:AEB84815.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Acetyl-CoA acetyltransferase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GD56_ALIDK
SCNpilot_expt_300_bf_scaffold_276_curated_54
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(56015..57724)
DNA (1710bp) protein (570aa)
poly(R)-hydroxyalkanoic acid synthase, class I; K03821 polyhydroxyalkanoate synthase [EC:2.3.1.-]
Poly(R)-hydroxyalkanoic acid synthase, class I n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GD55_ALIDK
Poly(R)-hydroxyalkanoic acid synthase, class I {ECO:0000313|EMBL:AEB84814.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_276_curated_55
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

57875..58165
DNA (291bp) protein (97aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U158_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAO23320.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_276_curated_56
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(58085..58933)
DNA (849bp) protein (283aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U157_ALIDB
multi-copper polyphenol oxidoreductase, laccase; K05810 conserved hypothetical protein
Laccase domain protein {ECO:0000256|RuleBase:RU361274}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_276_curated_57
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(58926..59591)
DNA (666bp) protein (222aa)
maleylacetoacetate isomerase (EC:5.2.1.2); K01800 maleylacetoacetate isomerase [EC:5.2.1.2]
Maleylacetoacetate isomerase {ECO:0000313|EMBL:AEB84811.1}; EC=5.2.1.2 {ECO:0000313|EMBL:AEB84811.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Maleylacetoacetate isomerase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GD52_ALIDK
SCNpilot_expt_300_bf_scaffold_276_curated_58
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

59707..60402
DNA (696bp) protein (232aa)
Fumarylacetoacetate (FAA) hydrolase n=2 Tax=Alicycliphilus denitrificans RepID=E8U155_ALIDB
fumarylacetoacetate (FAA) hydrolase
Fumarylacetoacetate hydrolase {ECO:0000313|EMBL:GAO23323.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_276_curated_59
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

60470..61018
DNA (549bp) protein (183aa)
NUDIX hydrolase n=2 Tax=Alicycliphilus denitrificans RepID=E8U154_ALIDB
nudix hydrolase
NUDIX hydrolase {ECO:0000313|EMBL:GAO23324.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_276_curated_60
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(61028..63532)
DNA (2505bp) protein (835aa)
peptidoglycan glycosyltransferase (EC:2.4.1.129); K05366 penicillin-binding protein 1A [EC:2.4.1.- 3.4.-.-]
Peptidoglycan glycosyltransferase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8U152_ALIDB
Peptidoglycan glycosyltransferase {ECO:0000313|EMBL:GAO23326.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
Displaying items 31-60 of 286 in total

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