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SCNpilot_expt_300_bf_scaffold_1520_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_1520_curated_1
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1..510
DNA (510bp) protein (170aa)
UPI0003D64C64 related cluster n=1 Tax=unknown RepID=UPI0003D64C64
Methyltransferase type 12 {ECO:0000313|EMBL:AHC45618.1}; TaxID=1216976 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans NBRC 15126 = ATCC 27061.;"
type 12 methyltransferase
SCNpilot_expt_300_bf_scaffold_1520_curated_2
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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507..1736
DNA (1230bp) protein (410aa)
UPI0003D5F04D related cluster n=1 Tax=unknown RepID=UPI0003D5F04D
Muropeptide transporter {ECO:0000313|EMBL:CKG96632.1}; TaxID=85698 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Alcaligenes xylosoxydans xylosoxydans (Achromobacter xylosoxidans).;"
uncharacterized LOC100486409
SCNpilot_expt_300_bf_scaffold_1520_curated_3
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1915..2325)
DNA (411bp) protein (137aa)
citrate synthase I; K01647 citrate synthase [EC:2.3.3.1]
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369, ECO:0000256|RuleBase:RU003370}; EC=2.3.3.16 {ECO:0000256|RuleBase:RU003370};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Citrate synthase n=2 Tax=Alicycliphilus denitrificans RepID=E8TYB3_ALIDB
SCNpilot_expt_300_bf_scaffold_1520_curated_4
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3192..3464)
DNA (273bp) protein (91aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TYB4_ALIDB
hypothetical protein; K09159 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAO23644.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_1520_curated_5
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3485..4189)
DNA (705bp) protein (235aa)
succinate dehydrogenase and fumarate reductase iron-sulfur protein (EC:1.3.5.1); K00240 succinate dehydrogenase iron-sulfur subunit [EC:1.3.99.1]
Succinate dehydrogenase iron-sulfur subunit {ECO:0000256|RuleBase:RU361237}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU361237};; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
Succinate dehydrogenase and fumarate reductase iron-sulfur protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TYB5_ALIDB
SCNpilot_expt_300_bf_scaffold_1520_curated_6
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4221..6026)
DNA (1806bp) protein (602aa)
succinate dehydrogenase, flavoprotein subunit; K00239 succinate dehydrogenase flavoprotein subunit [EC:1.3.99.1]
Succinate dehydrogenase flavoprotein subunit {ECO:0000256|RuleBase:RU362051}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU362051};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Succinate dehydrogenase, flavoprotein subunit n=2 Tax=Alicycliphilus denitrificans RepID=E8TYB6_ALIDB
SCNpilot_expt_300_bf_scaffold_1520_curated_7
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6077..6442)
DNA (366bp) protein (122aa)
Succinate dehydrogenase, hydrophobic membrane anchor protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TYB7_ALIDB
succinate dehydrogenase, hydrophobic membrane anchor protein; K00242 succinate dehydrogenase membrane anchor subunit
Succinate dehydrogenase, hydrophobic membrane anchor protein {ECO:0000313|EMBL:GAO23641.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_1520_curated_8
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6467..6898)
DNA (432bp) protein (144aa)
Succinate dehydrogenase, cytochrome b556 subunit n=2 Tax=Alicycliphilus denitrificans RepID=E8TYB8_ALIDB
succinate dehydrogenase, cytochrome b556 subunit; K00241 succinate dehydrogenase cytochrome b556 subunit
Succinate dehydrogenase, cytochrome b556 subunit {ECO:0000313|EMBL:GAO23640.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_1520_curated_9
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7049..7873)
DNA (825bp) protein (275aa)
UbiC transcription regulator-associated domain-containing protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TYB9_ALIDB
Transcription regulator protein {ECO:0000313|EMBL:GAO23639.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
GntR family transcriptional regulator; K03710 GntR family transcriptional regulator
SCNpilot_expt_300_bf_scaffold_1520_curated_10
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8504..8959
DNA (456bp) protein (152aa)
malate dehydrogenase; K00024 malate dehydrogenase [EC:1.1.1.37]
Malate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01517, ECO:0000256|SAAS:SAAS00060476}; EC=1.1.1.37 {ECO:0000256|HAMAP-Rule:MF_01517, ECO:0000256|SAAS:SAAS00060476};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Malate dehydrogenase n=2 Tax=Alicycliphilus denitrificans RepID=E8TYC0_ALIDB
SCNpilot_expt_300_bf_scaffold_1520_curated_11
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8972..9763
DNA (792bp) protein (264aa)
trans-aconitate 2-methyltransferase (EC:2.1.1.144); K00598 trans-aconitate 2-methyltransferase [EC:2.1.1.144]
Trans-aconitate 2-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00560, ECO:0000256|SAAS:SAAS00012147}; EC=2.1.1.144 {ECO:0000256|HAMAP-Rule:MF_00560, ECO:0000256|SAAS:SAAS00012147};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Trans-aconitate 2-methyltransferase n=2 Tax=Alicycliphilus denitrificans RepID=E8TYC1_ALIDB
SCNpilot_expt_300_bf_scaffold_1520_curated_12
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9971..10615
DNA (645bp) protein (215aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TYC2_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAO23636.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_1520_curated_13
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10733..13324
DNA (2592bp) protein (864aa)
Aconitate hydratase B {ECO:0000256|PIRNR:PIRNR036687}; EC=4.2.1.3 {ECO:0000256|PIRNR:PIRNR036687};; EC=4.2.1.99 {ECO:0000256|PIRNR:PIRNR036687};; 2-methylisocitrate dehydratase {ECO:0000256|PIRNR:PIRNR036687}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
aconitate hydratase 2; K01682 aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
Aconitate hydratase 2 n=2 Tax=Alicycliphilus denitrificans RepID=E8TYC3_ALIDB
Displaying 13 items

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