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SCNpilot_expt_300_bf_scaffold_476_curated

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Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_476_curated_1
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

43..1458
DNA (1416bp) protein (472aa)
replicative DNA helicase; K02314 replicative DNA helicase [EC:3.6.4.12]
Replicative DNA helicase n=2 Tax=Alicycliphilus denitrificans RepID=E8TYE4_ALIDB
Replicative DNA helicase protein {ECO:0000313|EMBL:GAO24423.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_476_curated_2
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1528..3060
DNA (1533bp) protein (511aa)
L-aminoadipate-semialdehyde dehydrogenase (EC:1.2.1.31); K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
Aldehyde Dehydrogenase n=2 Tax=Alicycliphilus denitrificans RepID=E8TYE3_ALIDB
Aldehyde Dehydrogenase {ECO:0000313|EMBL:ADV00841.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_476_curated_3
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3149..4888)
DNA (1740bp) protein (580aa)
PhoH family protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TYE2_ALIDB
PhoH family protein {ECO:0000313|EMBL:ADV00840.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
phoh family protein; K07175 PhoH-like ATPase
SCNpilot_expt_300_bf_scaffold_476_curated_4
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5047..5208)
DNA (162bp) protein (54aa)
alkyl hydroperoxide reductase; K03564 peroxiredoxin Q/BCP [EC:1.11.1.15]
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen n=2 Tax=Alicycliphilus denitrificans RepID=E8TYE1_ALIDB
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen {ECO:0000313|EMBL:ADV00839.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_476_curated_5
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5617..6306)
DNA (690bp) protein (230aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TYE0_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB83735.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_476_curated_6
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6565..7152
DNA (588bp) protein (196aa)
Cytochrome b561 n=2 Tax=Alicycliphilus denitrificans RepID=E8TYD9_ALIDB
cytochrome b561; K12262 cytochrome b561
Cytochrome b561 {ECO:0000313|EMBL:ADV00837.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_476_curated_7
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7149..7769
DNA (621bp) protein (207aa)
YceI family protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TYD8_ALIDB
hypothetical protein
YceI family protein {ECO:0000313|EMBL:AEB83737.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_476_curated_8
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7825..8400
DNA (576bp) protein (192aa)
YceI family protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TYD7_ALIDB
hypothetical protein
YceI family protein {ECO:0000313|EMBL:AEB83738.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_476_curated_9
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8572..9717)
DNA (1146bp) protein (382aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W518_ACISJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM41343.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_300_bf_scaffold_476_curated_10
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9722..10201)
DNA (480bp) protein (160aa)
Transcriptional regulator, MarR family n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W519_ACISJ
MarR family transcriptional regulator; K06075 MarR family transcriptional regulator, transcriptional regulator for hemolysin
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ABM41344.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_300_bf_scaffold_476_curated_11
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10302..12611)
DNA (2310bp) protein (770aa)
malic protein nad-binding protein; K00029 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
Malic protein NAD-binding protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TYD6_ALIDB
NADP-dependent malic enzyme protein {ECO:0000313|EMBL:GAO24415.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_476_curated_12
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12749..13180)
DNA (432bp) protein (144aa)
Xanthine permease n=2 Tax=Alicycliphilus denitrificans RepID=E8TXR5_ALIDB
xanthine permease; K03458 nucleobase:cation symporter-2, NCS2 family
Uracil-xanthine permease {ECO:0000313|EMBL:GAO24414.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_476_curated_13
Methylibium sp. T29, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13360..14295
DNA (936bp) protein (312aa)
Uncharacterized protein {ECO:0000313|EMBL:EWS53434.1}; TaxID=1430884 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29.;"
SCNpilot_expt_300_bf_scaffold_476_curated_14
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14483..16222
DNA (1740bp) protein (580aa)
Methyl-accepting chemotaxis sensory transducer n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MCC7_ACIET
methyl-accepting chemotaxis sensory transducer
Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:ACM33832.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCNpilot_expt_300_bf_scaffold_476_curated_15
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16200..17402
DNA (1203bp) protein (401aa)
hypothetical protein n=1 Tax=Burkholderia sp. WSM4176 RepID=UPI00037718E6
Diguanylate phosphodiesterase {ECO:0000313|EMBL:GAO24411.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
diguanylate cyclase/phosphodiesterase
SCNpilot_expt_300_bf_scaffold_476_curated_16
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17464..18717)
DNA (1254bp) protein (418aa)
Peptidase dimerization domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TXR3_ALIDB
peptidase dimerization domain protein
Peptidase dimerization domain-containing protein {ECO:0000313|EMBL:GAO24410.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_476_curated_17
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18714..20489)
DNA (1776bp) protein (592aa)
amidase (EC:3.5.1.87); K06016 N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.87]
Amidase, hydantoinase/carbamoylase family n=2 Tax=Alicycliphilus denitrificans RepID=E8TXR2_ALIDB
Hydantoinase {ECO:0000313|EMBL:GAO24409.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_476_curated_18
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20554..21507)
DNA (954bp) protein (318aa)
urate catabolism protein (EC:3.5.1.41)
Urate catabolism protein {ECO:0000313|EMBL:AEB83744.1}; EC=3.5.1.41 {ECO:0000313|EMBL:AEB83744.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Urate catabolism protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TXR1_ALIDB
SCNpilot_expt_300_bf_scaffold_476_curated_19
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21504..22181)
DNA (678bp) protein (226aa)
GntR domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TXR0_ALIDB
GntR family transcriptional regulator
GntR domain protein {ECO:0000313|EMBL:ADV00828.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_476_curated_20
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22236..23150)
DNA (915bp) protein (305aa)
LysR substrate-binding protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TXQ9_ALIDB
LysR family transcriptional regulator
LysR substrate-binding protein {ECO:0000313|EMBL:ADV00827.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_476_curated_21
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23275..24342
DNA (1068bp) protein (356aa)
tartrate dehydrogenase (EC:4.1.1.73); K07246 tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83]
Tartrate dehydrogenase {ECO:0000313|EMBL:AEB83747.1}; EC=4.1.1.73 {ECO:0000313|EMBL:AEB83747.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Tartrate dehydrogenase n=2 Tax=Alicycliphilus denitrificans RepID=E8TXQ8_ALIDB
SCNpilot_expt_300_bf_scaffold_476_curated_22
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24378..25361
DNA (984bp) protein (328aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TXQ7_ALIDB
hypothetical protein
Extra-cytoplasmic solute receptor family protein {ECO:0000313|EMBL:GAO24404.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_476_curated_23
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25440..26762
DNA (1323bp) protein (441aa)
hydroxypyruvate reductase (EC:1.1.1.81); K00050 hydroxypyruvate reductase [EC:1.1.1.81]
Hydroxypyruvate reductase {ECO:0000313|EMBL:AEB83749.1}; EC=1.1.1.81 {ECO:0000313|EMBL:AEB83749.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Hydroxypyruvate reductase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GDT2_ALIDK
SCNpilot_expt_300_bf_scaffold_476_curated_24
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26793..27689)
DNA (897bp) protein (299aa)
Regulatory protein LysR n=2 Tax=Alicycliphilus denitrificans RepID=E8TXQ5_ALIDB
LysR family transcriptional regulator
LysR family transcriptional regulator {ECO:0000313|EMBL:GAO24402.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_476_curated_25
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27885..29213
DNA (1329bp) protein (443aa)
aminotransferase class-iii; K00596 2,2-dialkylglycine decarboxylase (pyruvate) [EC:4.1.1.64]
Aminotransferase class-III n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TXQ4_ALIDB
Aminotransferase class-III {ECO:0000313|EMBL:GAO24401.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_476_curated_26
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29272..30162
DNA (891bp) protein (297aa)
Extracellular solute-binding protein family 3 n=2 Tax=Alicycliphilus denitrificans RepID=E8TXQ3_ALIDB
ABC transporter substrate-binding protein
ABC transporter substrate-binding protein {ECO:0000313|EMBL:GAO24400.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_476_curated_27
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30247..31176)
DNA (930bp) protein (310aa)
LysR substrate-binding protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TXQ2_ALIDB
LysR family transcriptional regulator
LysR family transcriptional regulator {ECO:0000313|EMBL:GAO24399.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_476_curated_28
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31287..33077
DNA (1791bp) protein (597aa)
Glyoxylate carboligase {ECO:0000313|EMBL:AEB83754.1}; EC=4.1.1.47 {ECO:0000313|EMBL:AEB83754.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
glyoxylate carboligase (EC:4.1.1.47); K01608 tartronate-semialdehyde synthase [EC:4.1.1.47]
Glyoxylate carboligase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GDT7_ALIDK
SCNpilot_expt_300_bf_scaffold_476_curated_29
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33107..33907
DNA (801bp) protein (267aa)
hydroxypyruvate isomerase (EC:5.3.1.22); K01816 hydroxypyruvate isomerase [EC:5.3.1.22]
Hydroxypyruvate isomerase {ECO:0000256|PIRNR:PIRNR006241}; EC=5.3.1.22 {ECO:0000256|PIRNR:PIRNR006241};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Hydroxypyruvate isomerase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GDT8_ALIDK
SCNpilot_expt_300_bf_scaffold_476_curated_30
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33955..34866
DNA (912bp) protein (304aa)
2-hydroxy-3-oxopropionate reductase (EC:1.1.1.60); K00042 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60]
2-hydroxy-3-oxopropionate reductase {ECO:0000313|EMBL:ADV00817.1}; EC=1.1.1.60 {ECO:0000313|EMBL:ADV00817.1};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
2-hydroxy-3-oxopropionate reductase n=2 Tax=Alicycliphilus denitrificans RepID=E8TXP9_ALIDB
Displaying items 1-30 of 41 in total

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