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SCNpilot_expt_300_bf_scaffold_1225_curated

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_1225_curated_1
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2..517)
DNA (516bp) protein (172aa)
TRAP dicarboxylate transporter, DctM subunit n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TY60_ALIDB
trap dicarboxylate transporter, dctm subunit
Trap dicarboxylate transporter subunit DctM {ECO:0000313|EMBL:GAO20611.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_1225_curated_2
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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748..984
DNA (237bp) protein (79aa)
Uncharacterised protein {ECO:0000313|EMBL:CRD98547.1}; TaxID=520 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis.;"
id=12551147 bin=BDI tax=BDI organism_group=Betaproteobacteria
SCNpilot_expt_300_bf_scaffold_1225_curated_3
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1133..1714)
DNA (582bp) protein (194aa)
Tripartite ATP-independent periplasmic transporter DctQ component n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G5H1_ALIDK
Tripartite ATP-independent periplasmic transporter {ECO:0000313|EMBL:GAO26389.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
TRAP dicarboxylate transporter subunit DctQ
SCNpilot_expt_300_bf_scaffold_1225_curated_4
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1879..2826
DNA (948bp) protein (316aa)
Regulatory protein LysR n=2 Tax=Alicycliphilus denitrificans RepID=E8TYT6_ALIDB
LysR family transcriptional regulator {ECO:0000313|EMBL:GAO26390.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
LysR family transcriptional regulator
SCNpilot_expt_300_bf_scaffold_1225_curated_5
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3030..3929
DNA (900bp) protein (300aa)
ABC-type transporter, periplasmic subunit family 3 n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G5H3_ALIDK
Extracellular solute-binding protein {ECO:0000313|EMBL:GAO26391.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
ABC transporter substrate-binding protein; K10001 glutamate/aspartate transport system substrate-binding protein
SCNpilot_expt_300_bf_scaffold_1225_curated_6
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4033..4785
DNA (753bp) protein (251aa)
Polar amino acid ABC transporter, inner membrane subunit n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G5H4_ALIDK
polar amino acid ABC transporter permease; K10003 glutamate/aspartate transport system permease protein
Polar amino acid ABC transporter, inner membrane subunit {ECO:0000313|EMBL:AEB83066.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_1225_curated_7
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4787..5458
DNA (672bp) protein (224aa)
Polar amino acid ABC transporter, inner membrane subunit n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G5H5_ALIDK
polar amino acid ABC transporter permease; K10002 glutamate/aspartate transport system permease protein
Polar amino acid ABC transporter, inner membrane subunit {ECO:0000313|EMBL:AEB83067.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_1225_curated_8
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5483..6220
DNA (738bp) protein (246aa)
ABC transporter; K10004 glutamate/aspartate transport system ATP-binding protein [EC:3.6.3.-]
ABC transporter related protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TYU0_ALIDB
ABC transporter related protein {ECO:0000313|EMBL:ADU98465.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_1225_curated_9
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6326..7360)
DNA (1035bp) protein (345aa)
Ornithine cyclodeaminase (EC:4.3.1.12); K01750 ornithine cyclodeaminase [EC:4.3.1.12]
Ornithine cyclodeaminase n=2 Tax=Alicycliphilus denitrificans RepID=E8TYU1_ALIDB
Ornithine cyclodeaminase {ECO:0000313|EMBL:GAO26395.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_1225_curated_10
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7421..8164)
DNA (744bp) protein (248aa)
HAD family hydrolase n=1 Tax=Acidovorax sp. NO-1 RepID=H0C4U7_9BURK
HAD family hydrolase {ECO:0000313|EMBL:EHL20326.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
hypothetical protein; K07024
SCNpilot_expt_300_bf_scaffold_1225_curated_11
unknown

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comp(8688..9467)
DNA (780bp) protein (260aa)
Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U7C5_PHYPA
Displaying 11 items

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