ggKbase home page

SCNpilot_expt_300_bf_scaffold_286_curated

Search features with annotation key words

Displaying items 1-30 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_286_curated_1
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(266..2281)
DNA (2016bp) protein (672aa)
DNA topoisomerase {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608}; EC=5.99.1.2 {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608};; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
topB1; DNA topoisomerase III; K03169 DNA topoisomerase III [EC:5.99.1.2]
DNA topoisomerase n=1 Tax=Thauera terpenica 58Eu RepID=T0B0E2_9RHOO
SCNpilot_expt_300_bf_scaffold_286_curated_2
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2568..2951)
DNA (384bp) protein (128aa)
Single-stranded DNA-binding protein n=1 Tax=Thauera terpenica 58Eu RepID=S9ZRZ9_9RHOO
Single-stranded DNA-binding protein {ECO:0000256|PIRNR:PIRNR002070}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
single-stranded DNA-binding protein; K03111 single-strand DNA-binding protein
SCNpilot_expt_300_bf_scaffold_286_curated_3
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2948..3496)
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P5A3_AROAE
Integrase regulator R {ECO:0000313|EMBL:GAO21680.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_286_curated_4
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3493..4263)
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P5A2_AROAE
Conserved domain protein {ECO:0000313|EMBL:GAO21679.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_286_curated_5
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4499..5647)
DNA (1149bp) protein (383aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa str. Stone 130 RepID=N2CXV7_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:GAO21678.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_286_curated_6
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5687..6247)
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P599_AROAE
Uncharacterized protein {ECO:0000313|EMBL:GAO21677.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_286_curated_7
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6263..7957)
DNA (1695bp) protein (565aa)
Uncharacterized protein n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P598_AROAE
Protein with ParB-like nuclease domain {ECO:0000313|EMBL:GAO21676.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_286_curated_8
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7950..8210)
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P597_AROAE
Uncharacterized protein {ECO:0000313|EMBL:GAO21675.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_286_curated_9
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8194..9063)
DNA (870bp) protein (290aa)
Chromosome partitioning protein n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P596_AROAE
Chromosome partitioning ATPase {ECO:0000313|EMBL:GAO21674.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
soj; chromosome partitioning protein
SCNpilot_expt_300_bf_scaffold_286_curated_10
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9108..9320)
DNA (213bp) protein (71aa)
Putative transcriptional regulator,possibly phage-related n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P595_AROAE
transcriptional regulator; K07733 prophage regulatory protein
Transcriptional regulator {ECO:0000313|EMBL:GAO21673.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_286_curated_11
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9497..10243)
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P594_AROAE
Receptor protein-tyrosine kinase {ECO:0000313|EMBL:GAO21672.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_286_curated_12
Cupriavidus metallidurans, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11123..11587
DNA (465bp) protein (155aa)
Uncharacterized protein n=3 Tax=Cupriavidus RepID=Q58AM8_RALME
bimB2; negative regulation of plasmid gene expression transcriptional repressor activity
Uncharacterized protein {ECO:0000313|EMBL:CAI11239.1}; TaxID=266264 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839).;"
SCNpilot_expt_300_bf_scaffold_286_curated_13
unknown

Not on your lists

comp(11520..12269)
DNA (750bp) protein (250aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_286_curated_14
unknown

Not on your lists

comp(12393..12590)
DNA (198bp) protein (66aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_286_curated_15
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12666..13445)
DNA (780bp) protein (260aa)
Putative Cytochrome c biogenesis protein n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CMA1_THIA3
putative Cytochrome c biogenesis protein
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
SCNpilot_expt_300_bf_scaffold_286_curated_16
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14096..14446)
DNA (351bp) protein (117aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI0003666A84
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
SCNpilot_expt_300_bf_scaffold_286_curated_17
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14484..15191)
DNA (708bp) protein (236aa)
macB; macrolide export ATP-binding/permease MacB; K05685 macrolide transport system ATP-binding/permease protein [EC:3.6.3.-]
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI00036126B2
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
SCNpilot_expt_300_bf_scaffold_286_curated_18
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15188..16375)
DNA (1188bp) protein (396aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI0003627905
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
SCNpilot_expt_300_bf_scaffold_286_curated_19
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16372..17568)
DNA (1197bp) protein (399aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI000365F58B
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
SCNpilot_expt_300_bf_scaffold_286_curated_20
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18044..19252)
DNA (1209bp) protein (403aa)
Major facilitator transporter n=1 Tax=Rhodanobacter sp. 115 RepID=I4VHX4_9GAMM
Major facilitator transporter {ECO:0000313|EMBL:EIL86815.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
major facilitator superfamily protein
SCNpilot_expt_300_bf_scaffold_286_curated_21
Paenibacillus sp. D9, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19310..19531)
DNA (222bp) protein (74aa)
Copper-exporting P-type ATPase A n=1 Tax=Paenibacillus sp. P22 RepID=T2LM51_9BACL
ATPase P {ECO:0000313|EMBL:KKC49603.1}; TaxID=665792 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. D9.;"
SCNpilot_expt_300_bf_scaffold_286_curated_22
Pseudomonas xanthomarina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19710..22160)
DNA (2451bp) protein (817aa)
Copper-transporting ATPase CopA {ECO:0000313|EMBL:CEG54771.1}; EC=3.6.3.4 {ECO:0000313|EMBL:CEG54771.1};; TaxID=271420 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas xanthomarina.;"
copA; copper-transporting ATPase CopA (EC:3.6.3.4)
Copper-transporting ATPase CopA n=1 Tax=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) RepID=C5ASF3_METEA
SCNpilot_expt_300_bf_scaffold_286_curated_23
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22237..22458)
DNA (222bp) protein (74aa)
MerR family transcriptional regulator n=1 Tax=Oceanibaculum indicum P24 RepID=K2JBF3_9PROT
MerR family transcriptional regulator {ECO:0000313|EMBL:EKE67944.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
heavy metal transport/detoxification protein
SCNpilot_expt_300_bf_scaffold_286_curated_24
Burkholderia sp. AU4i, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23006..23203)
DNA (198bp) protein (66aa)
Transcriptional regulator, MerR family n=1 Tax=Burkholderia vietnamiensis AU4i RepID=U2HNN3_BURVI
Transcriptional regulator, MerR family {ECO:0000313|EMBL:ERJ39818.1}; TaxID=1335308 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia sp. AU4i.;"
MerR family transcriptional regulator; K13638 MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
SCNpilot_expt_300_bf_scaffold_286_curated_25
Burkholderia sp. AU4i, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23215..23334)
DNA (120bp) protein (40aa)
Transcriptional regulator, MerR family n=1 Tax=Burkholderia vietnamiensis AU4i RepID=U2HNN3_BURVI
Transcriptional regulator, MerR family {ECO:0000313|EMBL:ERJ39818.1}; TaxID=1335308 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia sp. AU4i.;"
SCNpilot_expt_300_bf_scaffold_286_curated_26
Burkholderia sp. AU4i, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23339..23602)
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Burkholderia vietnamiensis AU4i RepID=U2G907_BURVI
Uncharacterized protein {ECO:0000313|EMBL:ERJ39817.1}; TaxID=1335308 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia sp. AU4i.;"
putative Thioredoxin/glutaredoxin
SCNpilot_expt_300_bf_scaffold_286_curated_27
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24200..24682)
DNA (483bp) protein (161aa)
Helix-turn-helix domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TU79_ALIDB
helix-turn-helix domain-containing protein
Helix-turn-helix domain protein {ECO:0000313|EMBL:ADV00484.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_286_curated_28
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24780..25082)
DNA (303bp) protein (101aa)
Histone family protein DNA-binding protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TU80_ALIDB
histone family protein DNA-binding protein; K03530 DNA-binding protein HU-beta
Histone family protein DNA-binding protein {ECO:0000313|EMBL:AEB84105.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_286_curated_29
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25299..25967
DNA (669bp) protein (223aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000372043A
Response regulator {ECO:0000313|EMBL:GAD24760.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
qseB2; two-component system response regulator QseB; K02483 two-component system, OmpR family, response regulator
SCNpilot_expt_300_bf_scaffold_286_curated_30
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25964..27358
DNA (1395bp) protein (465aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
ygiY; periplasmic sensor signal transduction histidine kinase (EC:2.7.3.-)
UPI0003D3CDEA related cluster n=1 Tax=unknown RepID=UPI0003D3CDEA
Displaying items 1-30 of 53 in total

View Taxonomy