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SCNpilot_expt_300_bf_scaffold_1146_curated

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_1146_curated_1
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..95)
DNA (93bp) protein (31aa)
DNA topoisomerase {ECO:0000256|RuleBase:RU000518}; EC=5.99.1.2 {ECO:0000256|RuleBase:RU000518, ECO:0000313|EMBL:CKG94552.1};; TaxID=85698 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Alcaligenes xylosoxydans xylosoxydans (Achromobacter xylosoxidans).;"
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA006 RepID=U8W4H9_PSEAI
DNA topoisomerase III
SCNpilot_expt_300_bf_scaffold_1146_curated_2
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(881..1408)
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IB45_BORPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ETU97042.1}; TaxID=1402581 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa PS42.;"
SCNpilot_expt_300_bf_scaffold_1146_curated_3
Pseudomonas knackmussii, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1405..2181)
DNA (777bp) protein (259aa)
Uncharacterized protein n=5 Tax=Proteobacteria RepID=A9IEN0_BORPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDF84532.1}; TaxID=1301098 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas knackmussii (strain DSM 6978 / LMG 23759 / B13).;"
SCNpilot_expt_300_bf_scaffold_1146_curated_4
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2627..3835)
DNA (1209bp) protein (403aa)
Uncharacterized protein n=2 Tax=Proteobacteria RepID=A4G6I3_HERAR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EPD44555.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
SCNpilot_expt_300_bf_scaffold_1146_curated_5
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3839..4399)
DNA (561bp) protein (187aa)
COG0635: Coproporphyrinogen III oxidase and related Fe-S oxidoreductases n=50 Tax=Proteobacteria RepID=B7V579_PSEA8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ERV83029.1}; TaxID=1402545 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa BL04.;"
SCNpilot_expt_300_bf_scaffold_1146_curated_6
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4415..5980)
DNA (1566bp) protein (522aa)
Uncharacterized protein n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9I9F8_BORPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAP41363.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCNpilot_expt_300_bf_scaffold_1146_curated_7
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6263..7138)
DNA (876bp) protein (292aa)
Cobyrinic acid a,c-diamide synthase {ECO:0000313|EMBL:EIK90793.1}; EC=2.7.10.2 {ECO:0000313|EMBL:EIK90793.1};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
Cobyrinic acid a,c-diamide synthase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MNK3_9BURK
cobyrinic acid a,c-diamide synthase
SCNpilot_expt_300_bf_scaffold_1146_curated_8
Alcaligenes sp. EGD-AK7, Alcaligenes, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7180..7392)
DNA (213bp) protein (71aa)
Uncharacterized protein n=2 Tax=Pseudomonas aeruginosa RepID=U8L9R4_PSEAI
Transcriptional regulator {ECO:0000313|EMBL:ERI33723.1}; TaxID=1386079 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes.;" source="Alcaligenes sp. EGD-AK7.;"
alpA; DNA-binding transcriptional activator; K07733 prophage regulatory protein
SCNpilot_expt_300_bf_scaffold_1146_curated_9
Pseudomonas sp. 1-7, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7511..8257)
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa CF77 RepID=U8BIP1_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:KFJ91150.1}; TaxID=633150 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 1-7.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_1146_curated_10
unknown

Not on your lists

comp(8483..8677)
DNA (195bp) protein (65aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_1146_curated_11
Stenotrophomonas sp. SKA14, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8838..9377)
DNA (540bp) protein (180aa)
Integrase n=2 Tax=Gammaproteobacteria RepID=G4LMX3_PSEAI
integrase
Integrase {ECO:0000313|EMBL:EED37049.1}; TaxID=391601 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. SKA14.;"
SCNpilot_expt_300_bf_scaffold_1146_curated_12
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9322..10743)
DNA (1422bp) protein (474aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA026 RepID=U8N7W5_PSEAI
integrase family protein
Integrase family protein {ECO:0000313|EMBL:ABX36770.1}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (strain DSM 14801 / SPH-1).;"
SCNpilot_expt_300_bf_scaffold_1146_curated_13
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11173..11715)
DNA (543bp) protein (181aa)
Transcriptional regulator, Rrf2 family n=2 Tax=Alicycliphilus denitrificans RepID=E8TXD2_ALIDB
BadM/Rrf2 family transcriptional regulator
Transcriptional regulator, BadM/Rrf2 family {ECO:0000313|EMBL:AEB84343.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_1146_curated_14
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11880..12134)
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TXD3_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAO23776.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_1146_curated_15
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12337..12597
DNA (261bp) protein (87aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TXD4_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB84344.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_1146_curated_16
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12609..13484)
DNA (876bp) protein (292aa)
phosphatidylserine decarboxylase; K01613 phosphatidylserine decarboxylase [EC:4.1.1.65]
Phosphatidylserine decarboxylase proenzyme {ECO:0000256|HAMAP-Rule:MF_00662, ECO:0000256|SAAS:SAAS00154492}; EC=4.1.1.65 {ECO:0000256|HAMAP-Rule:MF_00662, ECO:0000256|SAAS:SAAS00093350};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Phosphatidylserine decarboxylase proenzyme n=2 Tax=Alicycliphilus denitrificans RepID=E8TXD5_ALIDB
SCNpilot_expt_300_bf_scaffold_1146_curated_17
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13779..14867
DNA (1089bp) protein (363aa)
CBS domain containing protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TXD6_ALIDB
cbs domain containing protein; K07168 CBS domain-containing membrane protein
CBS domain containing protein {ECO:0000313|EMBL:ADU99591.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_1146_curated_18
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15112..15372
DNA (261bp) protein (87aa)
Translation initiation factor IF-1 n=2 Tax=Alicycliphilus denitrificans RepID=E8TXD7_ALIDB
translation initiation factor if-1; K02518 translation initiation factor IF-1
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_1146_curated_19
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15682..16380
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G7A5_ALIDK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB84349.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_1146_curated_20
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16392..16685)
DNA (294bp) protein (98aa)
Integration host factor, beta subunit n=2 Tax=Alicycliphilus denitrificans RepID=E8TXE0_ALIDB
integration host factor subunit beta; K05788 integration host factor subunit beta
Integration host factor, beta subunit {ECO:0000313|EMBL:ADU99595.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_1146_curated_21
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(16759..18444)
DNA (1686bp) protein (562aa)
30S ribosomal protein S1 n=2 Tax=Alicycliphilus denitrificans RepID=E8TXE1_ALIDB
ribosomal protein s1; K02945 small subunit ribosomal protein S1
30S ribosomal protein S1 {ECO:0000256|PIRNR:PIRNR002111}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_1146_curated_22
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18625..20640)
DNA (2016bp) protein (672aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|RuleBase:RU000531, ECO:0000256|SAAS:SAAS00240549}; EC=2.5.1.19 {ECO:0000256|RuleBase:RU000531, ECO:0000256|SAAS:SAAS00240533};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Cytidylate kinase (EC:2.5.1.19 2.7.4.14); K00800 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G7A8_ALIDK
SCNpilot_expt_300_bf_scaffold_1146_curated_23
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20640..21524)
DNA (885bp) protein (295aa)
prephenate dehydrogenase (EC:1.3.1.12); K04517 prephenate dehydrogenase [EC:1.3.1.12]
Prephenate dehydrogenase {ECO:0000313|EMBL:ADU99598.1}; EC=1.3.1.12 {ECO:0000313|EMBL:ADU99598.1};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Prephenate dehydrogenase n=2 Tax=Alicycliphilus denitrificans RepID=E8TXE3_ALIDB
SCNpilot_expt_300_bf_scaffold_1146_curated_24
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21535..22635)
DNA (1101bp) protein (367aa)
chorismate mutase; K14170 chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
Chorismate mutase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G7B0_ALIDK
Chorismate mutase {ECO:0000313|EMBL:AEB84354.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_1146_curated_25
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22754..23863)
DNA (1110bp) protein (370aa)
phosphoserine aminotransferase (EC:2.6.1.52); K00831 phosphoserine aminotransferase [EC:2.6.1.52]
Phosphoserine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160, ECO:0000256|RuleBase:RU004505}; EC=2.6.1.52 {ECO:0000256|HAMAP-Rule:MF_00160, ECO:0000256|RuleBase:RU004505};; Phosphohydroxythreonine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
Phosphoserine aminotransferase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G7B1_ALIDK
SCNpilot_expt_300_bf_scaffold_1146_curated_26
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(23930..24133)
DNA (204bp) protein (68aa)
DNA gyrase subunit A (EC:5.99.1.3); K02469 DNA gyrase subunit A [EC:5.99.1.3]
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
DNA gyrase subunit A n=2 Tax=Alicycliphilus denitrificans RepID=E8TXE6_ALIDB
SCNpilot_expt_300_bf_scaffold_1146_curated_27
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24709..25476
DNA (768bp) protein (256aa)
val start codon n=1 Tax=Burkholderia pseudomallei RepID=UPI00016AB2EE
hypothetical protein
Val start codon {ECO:0000313|EMBL:ABA48200.1}; TaxID=320372 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei (strain 1710b).;"
SCNpilot_expt_300_bf_scaffold_1146_curated_28
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26733..27395
DNA (663bp) protein (221aa)
OmpA/MotB domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TXE7_ALIDB
ompa/motb domain protein; K03286 OmpA-OmpF porin, OOP family
OmpA/MotB domain-containing protein {ECO:0000313|EMBL:GAO23748.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
Displaying 28 items

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