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SCNpilot_expt_300_bf_scaffold_634_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_634_curated_1
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(62..1036)
DNA (975bp) protein (325aa)
2-nitropropane dioxygenase; K00459 nitronate monooxygenase [EC:1.13.12.16]
2-nitropropane dioxygenase NPD n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TRZ2_ALIDB
2-nitropropane dioxygenase {ECO:0000313|EMBL:GAO25026.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_634_curated_2
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1044..2039)
DNA (996bp) protein (332aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TRZ3_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV01470.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_634_curated_3
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2112..3338)
DNA (1227bp) protein (409aa)
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TRZ4_ALIDB
l-carnitine dehydratase/bile acid-inducible protein f
Fomryl-CoA transferase {ECO:0000313|EMBL:GAO25028.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_634_curated_4
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3363..4163)
DNA (801bp) protein (267aa)
Enoyl-CoA hydratase/isomerase n=2 Tax=Alicycliphilus denitrificans RepID=E8TRZ6_ALIDB
enoyl-CoA hydratase
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:ADV01473.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_634_curated_5
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4279..5409)
DNA (1131bp) protein (377aa)
Acyl-CoA dehydrogenase domain-containing protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G586_ALIDK
acyl-CoA dehydrogenase domain-containing protein
Acyl-CoA dehydrogenase domain-containing protein {ECO:0000313|EMBL:AEB86432.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_634_curated_6
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5420..6616)
DNA (1197bp) protein (399aa)
Isovaleryl-CoA dehydrogenase (EC:1.3.99.10); K00257 [EC:1.3.99.-]
Isovaleryl-CoA dehydrogenase {ECO:0000313|EMBL:AEB86433.1}; EC=1.3.99.10 {ECO:0000313|EMBL:AEB86433.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Isovaleryl-CoA dehydrogenase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G587_ALIDK
SCNpilot_expt_300_bf_scaffold_634_curated_7
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6629..7813)
DNA (1185bp) protein (395aa)
acetyl-CoA acetyltransferase (EC:2.3.1.16); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:AEB86434.1}; EC=2.3.1.16 {ECO:0000313|EMBL:AEB86434.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Acetyl-CoA acetyltransferase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G588_ALIDK
SCNpilot_expt_300_bf_scaffold_634_curated_8
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7942..10059)
DNA (2118bp) protein (706aa)
3-hydroxyacyl-CoA dehydrogenase; K07516 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TS00_ALIDB
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein {ECO:0000313|EMBL:GAO25034.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_634_curated_9
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10170..11090
DNA (921bp) protein (307aa)
LysR substrate-binding protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TS01_ALIDB
LysR family transcriptional regulator
LysR family transcriptional regulator {ECO:0000313|EMBL:GAO25035.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_634_curated_10
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11125..11445)
DNA (321bp) protein (107aa)
Antibiotic biosynthesis monooxygenase n=1 Tax=Advenella kashmirensis W13003 RepID=V8QYQ1_9BURK
Antibiotic biosynthesis monooxygenase {ECO:0000313|EMBL:ETF04455.1}; TaxID=1424334 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis W13003.;"
Antibiotic biosynthesis monooxygenase
SCNpilot_expt_300_bf_scaffold_634_curated_11
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11490..12596)
DNA (1107bp) protein (369aa)
Carnitine dehydratase n=1 Tax=Advenella kashmirensis W13003 RepID=V8QX12_9BURK
Carnitine dehydratase {ECO:0000313|EMBL:ETF04466.1}; TaxID=1424334 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis W13003.;"
L-carnitine dehydratase/bile acid-inducible protein F
SCNpilot_expt_300_bf_scaffold_634_curated_12
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12743..13696
DNA (954bp) protein (318aa)
MFS transporter n=1 Tax=Advenella kashmirensis W13003 RepID=V8QYQ7_9BURK
MFS transporter {ECO:0000313|EMBL:ETF04465.1}; TaxID=1424334 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis W13003.;"
bugT1; extra-cytoplasmic solute receptor BugT
SCNpilot_expt_300_bf_scaffold_634_curated_13
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14114..14674
DNA (561bp) protein (187aa)
LysR family transcriptional regulator n=1 Tax=Advenella kashmirensis W13003 RepID=V8QZL0_9BURK
LysR family transcriptional regulator {ECO:0000313|EMBL:ETF04454.1}; TaxID=1424334 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis W13003.;"
LysR family transcriptional regulator
SCNpilot_expt_300_bf_scaffold_634_curated_14
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14671..15117
DNA (447bp) protein (149aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5D1H3_VARPS
Glyoxalase/bleomycin resistance protein/dioxygenase
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:ACS22743.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
Displaying 14 items

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