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SCNpilot_expt_300_bf_scaffold_360_curated

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Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_360_curated_1
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(161..1279)
DNA (1119bp) protein (373aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037CCF5C
Metallo-beta-lactamase {ECO:0000313|EMBL:GAD22327.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein rbh
SCNpilot_expt_300_bf_scaffold_360_curated_2
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1290..2225)
DNA (936bp) protein (312aa)
LysR substrate-binding protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TYP0_ALIDB
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AEB86981.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_360_curated_3
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2333..3319
DNA (987bp) protein (329aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TYP1_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB86982.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_360_curated_4
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3331..4950
DNA (1620bp) protein (540aa)
gamma-glutamyltransferase (EC:2.3.2.2); K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2]
Gamma-glutamyltransferase {ECO:0000313|EMBL:AEB86983.1}; EC=2.3.2.2 {ECO:0000313|EMBL:AEB86983.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Gamma-glutamyltransferase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GBR2_ALIDK
SCNpilot_expt_300_bf_scaffold_360_curated_5
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4960..5622)
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GBR3_ALIDK
Uncharacterized protein {ECO:0000313|EMBL:GAO25651.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_360_curated_6
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5744..6571)
DNA (828bp) protein (276aa)
FAD-binding protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003742365
Siderophore-interacting protein {ECO:0000313|EMBL:GAD22336.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
Siderophore-interacting protein
SCNpilot_expt_300_bf_scaffold_360_curated_7
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6752..7273)
DNA (522bp) protein (174aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037F84E9
Predicted transcriptional regulator {ECO:0000313|EMBL:GAD22337.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
PadR-like family transcriptional regulator
SCNpilot_expt_300_bf_scaffold_360_curated_8
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7368..9023)
DNA (1656bp) protein (552aa)
Fumarate reductase/succinate dehydrogenase flavoprotein domain protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GBR4_ALIDK
Fumarate reductase/succinate dehydrogenase flavoprotein domain protein {ECO:0000313|EMBL:AEB86985.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein
SCNpilot_expt_300_bf_scaffold_360_curated_9
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9023..10660)
DNA (1638bp) protein (546aa)
spermidine synthase (EC:2.5.1.16); K00797 spermidine synthase [EC:2.5.1.16]
Spermidine synthase n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0QBY1_ACIAP
Polyamine aminopropyltransferase {ECO:0000256|HAMAP-Rule:MF_00198}; Putrescine aminopropyltransferase {ECO:0000256|HAMAP-Rule:MF_00198}; Spermidine synthase {ECO:0000256|HAMAP-Rule:MF_00198}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
SCNpilot_expt_300_bf_scaffold_360_curated_10
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10674..10895)
DNA (222bp) protein (74aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TYP6_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV02055.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_360_curated_11
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10936..12420)
DNA (1485bp) protein (495aa)
Putative transmembrane protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TYP7_ALIDB
Transmembrane protein {ECO:0000313|EMBL:GAO25655.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
putative transmembrane protein
SCNpilot_expt_300_bf_scaffold_360_curated_12
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12489..13529)
DNA (1041bp) protein (347aa)
Band 7 protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TYP8_ALIDB
hypothetical protein
Band 7 protein {ECO:0000313|EMBL:AEB86989.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_360_curated_13
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13699..13956
DNA (258bp) protein (86aa)
UPI0003D3FDBE related cluster n=2 Tax=Acidovorax sp. MR-S7 RepID=UPI0003D3FDBE
Predicted membrane protein {ECO:0000313|EMBL:GAD22346.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_360_curated_14
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14073..14378)
DNA (306bp) protein (102aa)
Flagellar basal body rod protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0I5B2_9BURK
flagellar basal body rod protein
Flagellar basal body rod protein {ECO:0000313|EMBL:AFU48417.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_300_bf_scaffold_360_curated_15
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14544..16136
DNA (1593bp) protein (531aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BXC3_DELAS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABX38199.1}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (strain DSM 14801 / SPH-1).;"
SCNpilot_expt_300_bf_scaffold_360_curated_16
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16165..17118)
DNA (954bp) protein (318aa)
Transcriptional regulator, LysR family n=1 Tax=Acidovorax delafieldii 2AN RepID=C5TA70_ACIDE
LysR family transcriptional regulator
Tax=GWA2_Burkholderiales_64_37_curated
SCNpilot_expt_300_bf_scaffold_360_curated_17
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17218..18573
DNA (1356bp) protein (452aa)
beta-alanine--pyruvate transaminase (EC:2.6.1.18); K00822 beta-alanine--pyruvate transaminase [EC:2.6.1.18]
Beta-alanine--pyruvate transaminase n=2 Tax=Alicycliphilus denitrificans RepID=E8TYQ2_ALIDB
Beta alanine-pyruvate transaminase {ECO:0000313|EMBL:GAO25660.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_360_curated_18
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18643..20160
DNA (1518bp) protein (506aa)
methylmalonate-semialdehyde dehydrogenase; K00140 malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
Methylmalonate-semialdehyde dehydrogenase n=2 Tax=Alicycliphilus denitrificans RepID=E8TYQ3_ALIDB
Methylmalonate-semialdehyde dehydrogenase {ECO:0000313|EMBL:ADV02062.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_360_curated_19
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20247..21374
DNA (1128bp) protein (376aa)
Diguanylate cyclase n=2 Tax=Alicycliphilus denitrificans RepID=E8TYQ4_ALIDB
diguanylate cyclase
Diguanylate cyclase {ECO:0000313|EMBL:GAO25662.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_360_curated_20
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21394..22251)
DNA (858bp) protein (286aa)
GntR domain protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TYQ5_ALIDB
GntR family transcriptional regulator
GntR family transcriptional regulator {ECO:0000313|EMBL:GAO25663.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_360_curated_21
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22473..23678
DNA (1206bp) protein (402aa)
Extracellular ligand-binding receptor n=2 Tax=Alicycliphilus denitrificans RepID=E8TYQ6_ALIDB
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein
Extracellular ligand-binding receptor {ECO:0000313|EMBL:AEB86997.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_360_curated_22
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23713..24573
DNA (861bp) protein (287aa)
Inner-membrane translocator n=2 Tax=Alicycliphilus denitrificans RepID=E8TYQ7_ALIDB
ABC transporter permease; K01997 branched-chain amino acid transport system permease protein
ABC-type transporter, integral membrane subunit {ECO:0000313|EMBL:AEB86998.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_360_curated_23
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24579..25574
DNA (996bp) protein (332aa)
Inner-membrane translocator n=2 Tax=Alicycliphilus denitrificans RepID=E8TYQ8_ALIDB
ABC transporter permease; K01998 branched-chain amino acid transport system permease protein
ABC transporter permease {ECO:0000313|EMBL:GAO25665.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_360_curated_24
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25571..26353
DNA (783bp) protein (261aa)
monosaccharide-transporting ATPase (EC:3.6.3.17); K01995 branched-chain amino acid transport system ATP-binding protein
Monosaccharide-transporting ATPase {ECO:0000313|EMBL:AEB87000.1}; EC=3.6.3.17 {ECO:0000313|EMBL:AEB87000.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
ABC transporter related protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TYQ9_ALIDB
SCNpilot_expt_300_bf_scaffold_360_curated_25
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26350..27063
DNA (714bp) protein (238aa)
ABC transporter related protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TYR0_ALIDB
ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein
ABC transporter related protein {ECO:0000313|EMBL:AEB87001.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_360_curated_26
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27077..28333
DNA (1257bp) protein (419aa)
amidase (EC:3.5.1.87); K06016 N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.87]
Amidase, hydantoinase/carbamoylase family {ECO:0000313|EMBL:ADV02070.1}; EC=3.5.1.87 {ECO:0000313|EMBL:ADV02070.1};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Amidase, hydantoinase/carbamoylase family n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TYR1_ALIDB
SCNpilot_expt_300_bf_scaffold_360_curated_27
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28330..29796
DNA (1467bp) protein (489aa)
Microcystin LR degradation protein MlrC n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GBT2_ALIDK
Microcystin LR degradation protein MlrC
Microcystinase C {ECO:0000256|PIRNR:PIRNR012702}; Short=MlrC {ECO:0000256|PIRNR:PIRNR012702};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_360_curated_28
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29944..32253
DNA (2310bp) protein (770aa)
malic protein nad-binding protein; K00029 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
Malic protein NAD-binding protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TYR3_ALIDB
Malic protein NAD-binding protein {ECO:0000313|EMBL:ADV02072.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_360_curated_29
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32387..32731
DNA (345bp) protein (115aa)
guanine-specific ribonuclease N1 and T1; K01167 ribonuclease T1 [EC:3.1.27.3]
Guanine-specific ribonuclease N1 and T1 n=2 Tax=Alicycliphilus denitrificans RepID=E8TYR4_ALIDB
Guanine-specific ribonuclease N1 and T1 {ECO:0000313|EMBL:AEB87005.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_360_curated_30
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32872..33297
DNA (426bp) protein (142aa)
Barstar (Barnase inhibitor) n=2 Tax=Alicycliphilus denitrificans RepID=E8TYR5_ALIDB
barstar (barnase inhibitor)
Barstar (Barnase inhibitor) {ECO:0000313|EMBL:ADV02074.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Displaying items 1-30 of 44 in total

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