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SCNpilot_expt_300_bf_scaffold_385_curated_46

Organism: scnpilot_dereplicated_Alicycliphilus_1

near complete RP 50 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38
Location: comp(53202..56693)

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 97.7
  • Coverage: 999.99
  • Bit_score: 2257
  • Evalue 0.0
transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] similarity KEGG
DB: KEGG
  • Identity: 97.7
  • Coverage: 999.99
  • Bit_score: 2257
  • Evalue 0.0
Transcription-repair-coupling factor n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TRG9_ALIDB similarity UNIREF
DB: UNIREF100
  • Identity: 97.7
  • Coverage: 999.99
  • Bit_score: 2257
  • Evalue 0.0

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Taxonomy

Alicycliphilus denitrificans → Alicycliphilus → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 3492
ATGCAGCTTCCCAAACTCTCCCCCGCCAAACGATTCACCCTGCCCCGCCCCGTGGGCAGCAGCGACGCGCTGCTGCTGGCCCGCCTGGGGCAGCAGCAGAAGGCCGAGGGCCGCACCACGGCCATCGTCACGGCCGACGCCGGCGACGCGCAGCGGCTCATCGACGAGATCGCCTTCTTCGCCCCCGATCTGCGCTGCGCCCTGTTCCCCGACTGGGAGACCCTGCCCTACGACAGCTTCTCGCCGCACCAGGACCTGATCAGCGAGCGCCTGGCGACGCTGTGGCGCATCTCGCAAAGGGACAAGGACACGGGCGCCGACGTGGTGCTGGTGCCCGCCACCACGGCCCTGTACCGTCTGGCCCCGCCCTCGTTCCTGGCGGGCTACACCTTCCACTTCAAGACCGGGCAGCGGCTCGACGAGGCCAGGCTGCGCGCCCAGCTCACGCTCGCGGGCTACCAGCACGTGTCGCAGGTCGTCGGCCATGGCGAGTACGCGGTGCGCGGCGGCCTCATCGACCTGTTCCCCATGGGCTCGCCGCAGCCCTACCGGGTGGACCTGTTCGACGACGAGATCGACTCGATACGCACCTTCGACCCCGACAGCCAGCGCAGCCTGTATCCCGTGCCCGAGGTGCGCCTGCTGCCCGGGCGCGAGTTCCCCATGGACGAGGCCGCGCGCGCCAAGTTCCGCCAGCGCTGGCGCGAGCTGCTGGAGGGCGACCCCACGCGCAGCCGCATCTACAAGGACATGGGCAACGGCGTGGCCACCGCCGGCATCGAGTACTACCTGCCGCTGTTCTTCGACGAGACGGCCACCGTGTTCGACTACCTCGGCTTTGATGCCACCGTGGTGCTGCACGGCGACCTGGAGGGCGCGTTCCAGCGCTTCTGGCAGGACACGCGCGAGCGCTACCGACTGATCCAGGGCGACCCGGACCACCCCGTGCTGCCGCCCGAGGCGCTGTTCCTCTCGGCCGACCAGTTCTACGGCCAGGCCAAGCCCCACGCCCAGCTGTCGCTGCGCCCGGGCGTGGAGGACGTGCAGGACAACGCCCAGTTCCAGAAGCTGCCCGACCTGTCCGTGGTGCGCGGCGCCGACGACCCGCTCGCCAGGCTCCAAGCCCACATACGCGCCACGCCGCAGCGCGTGCTGCTGCTGGCCGAGAGCGACGGCAGGCGCGAGAGCCTGCTGGACTTCCTGCGCGCCTCGGGGCTGAACCCGCCGGCGTTCGACTCGCTGGCCGAGTTCCAGACCACGCCCGAGGAGCGCGTGGGCATCGCCACGGCGGCGCTGGCCACGGGCTTCGCGTGGGTCGAGGAAGGCCTGGACCTCGTCACCGAGACCGAGCTCTTCGCCACCGCCCCCACCACGCGCCGGCGCAAGAAGCAGGAGCAGGCCAGCGACGTGGAGGCGCTGATCAAGGACCTGTCGGAGCTCAAGGTGGGCGACCCCGTGGTGCACAGCCAGCACGGCATAGGCCGCTACCGCGGATTGATGAGCATGGACATGGGCAACAAGAACCCCGACGGCACGCCCGCCCTGCAGGAGTTTTTGCACCTGGAATACGCCGACAAGGCCGTGCTCTACGTACCCGTGAGCCAGCTGCAGCTCATCGGCCGCTACACGGGCGTGTCGGCCGACGAGGCGCCGCTGCACAAGCTCGGCAGCGGCCAGTGGGAGAAGGCCAAGCGCAAGGCCGCAAGCCAAGTGCGCGACGCGGCGGCCGAGCTGCTCAACATCTACGCCCGGCGCGCGGCGCGCCAGGGCCATGCCTTCCGCTACTCGCCGCAGGACTACGAGCAGTTCGTCGCCGACTTCGGCTTCGAGGAAACGGCCGACCAGAACGCCGCCATCCACGCCGTGGTGCAGGACATGATCAGCCCGCGCCCCATGGACCGCCTGGTCTGCGGCGACGTGGGCTTCGGCAAGACCGAGGTCGCCCTGCGCGCCTGCTTCGTCGCCGTGACGGGCGGCAAGCAGGTCGCCTTCCTCGCGCCCACCACGCTGCTGGCCGAGCAGCACTACCGCACGCTGTGCGACCGCTTCGCCAAATGGCCCGTGAAGGTGGCCGAGGTCTCGCGCTTCCGCTCGGGCAAGGAGATCACCGCGGCGGTCAAGGGCATCGCCGACGGCACGGTGGACATCGTCGTGGGCACGCACAAGCTGCTCAGCGAATCGACCAAGTTCAAGAACCTGGGCCTGCTCATCATCGACGAGGAACACCGCTTCGGCGTGCGCCACAAGGAGGCCATGAAGGCCATGCGCGCCGAGGTGGACGTGCTCACGCTCACGGCCACGCCCATCCCGCGCACCATGGGCATGGCGCTCGAAGGCCTGCGCGACCTCTCCGTGATCGCCACCGCGCCGCAGCGGCGCCTGGCCATCAAGACCTTCGTGAGGAACGAGGGCACGGGCGTGATCCGCGAGGCCGTGCTGCGCGAACTGAAGCGCGGCGGCCAGTGCTACTTCCTGCACAACGAGGTCGAGACCATAGAGAACCGGCGCCAGAAGCTCGAGGAAATACTGCCCGAGGCGCGCATCGCCGTGGCCCACGGCCAGATGCCCGAGCGCGAGCTGGAGAAGGTCATGCGCGACTTCGTGGCCCAGCGCTACAACATCCTGCTGTGCTCGACCATCATCGAGACCGGCATCGACGTGCCCAGCGCCAACACCATCCTCATCAGCCGCGCCGACAAGTTCGGCCTGGCACAGCTGCACCAGCTGCGCGGGCGCGTGGGCCGCAGCCACCACCAGGCCTATGCCTACCTGATGGTGCCCGACCTGGAGGGCCTGACCAAGCAGGCCCAGCAGCGCCTGGAGGCCATCCAGCAGATGGAGGAGCTGGGCAGCGGCTTCTACCTGGCCATGCACGACCTGGAGATACGCGGCGCGGGCGAGGTGCTGGGCGAGAACCAGAGCGGCAACATGCTGGAGGTGGGCTTCCAGCTCTACAACGAGATGCTGGCCGAGGCCGTGCGCTGCCTCAAGGCCGGCAAGGAGCCCGACCTGCTCGCGCCCATGCAGGCCGCGACCGACATCAACCTGCACGCGCCCGCGCTGCTGCCCGACGACTACTGCGGCGACGTGCACCTGCGCCTGTCCTTCTACAAGAAGCTGGCCACGGCGCGCAGCAACGACCAGATCGACGCGCTGCTCGAAGAGATCGTGGACCGCTTCGGCAAGCTGCCGCCCCAGGCGCAGACCCTCATCGACGTGCACCGCCTGCGCGTGCTCTCCGCGCCCTACGGCGTGGCCAAGGTGGATGCGGCGCCGGGCGTCATCAACATCACCTTCAAGCCCCGCCCGCCCATCGACCCGATGGCCATCATCGGGCTCATCCAGAAGAACAGGCACATCAAGCTCGCGGGCAACGAAAAGCTGCGCATAGAACGCGCGCTGCCCGATCCGGCGGCGCGCGCGCAGATGGTGCGCGACGTGCTGCGCAGCCTGGGCCAGCCGCTGGCCGAAACGGCGGCCGTGCCGGCCTGA
PROTEIN sequence
Length: 1164
MQLPKLSPAKRFTLPRPVGSSDALLLARLGQQQKAEGRTTAIVTADAGDAQRLIDEIAFFAPDLRCALFPDWETLPYDSFSPHQDLISERLATLWRISQRDKDTGADVVLVPATTALYRLAPPSFLAGYTFHFKTGQRLDEARLRAQLTLAGYQHVSQVVGHGEYAVRGGLIDLFPMGSPQPYRVDLFDDEIDSIRTFDPDSQRSLYPVPEVRLLPGREFPMDEAARAKFRQRWRELLEGDPTRSRIYKDMGNGVATAGIEYYLPLFFDETATVFDYLGFDATVVLHGDLEGAFQRFWQDTRERYRLIQGDPDHPVLPPEALFLSADQFYGQAKPHAQLSLRPGVEDVQDNAQFQKLPDLSVVRGADDPLARLQAHIRATPQRVLLLAESDGRRESLLDFLRASGLNPPAFDSLAEFQTTPEERVGIATAALATGFAWVEEGLDLVTETELFATAPTTRRRKKQEQASDVEALIKDLSELKVGDPVVHSQHGIGRYRGLMSMDMGNKNPDGTPALQEFLHLEYADKAVLYVPVSQLQLIGRYTGVSADEAPLHKLGSGQWEKAKRKAASQVRDAAAELLNIYARRAARQGHAFRYSPQDYEQFVADFGFEETADQNAAIHAVVQDMISPRPMDRLVCGDVGFGKTEVALRACFVAVTGGKQVAFLAPTTLLAEQHYRTLCDRFAKWPVKVAEVSRFRSGKEITAAVKGIADGTVDIVVGTHKLLSESTKFKNLGLLIIDEEHRFGVRHKEAMKAMRAEVDVLTLTATPIPRTMGMALEGLRDLSVIATAPQRRLAIKTFVRNEGTGVIREAVLRELKRGGQCYFLHNEVETIENRRQKLEEILPEARIAVAHGQMPERELEKVMRDFVAQRYNILLCSTIIETGIDVPSANTILISRADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDLEGLTKQAQQRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGENQSGNMLEVGFQLYNEMLAEAVRCLKAGKEPDLLAPMQAATDINLHAPALLPDDYCGDVHLRLSFYKKLATARSNDQIDALLEEIVDRFGKLPPQAQTLIDVHRLRVLSAPYGVAKVDAAPGVINITFKPRPPIDPMAIIGLIQKNRHIKLAGNEKLRIERALPDPAARAQMVRDVLRSLGQPLAETAAVPA*