name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_300_bf_scaffold_385_curated_31
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(40623..41606)
|
Transcriptional regulator, LysR family n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GDD2_ALIDK
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AEB85961.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
|
|
SCNpilot_expt_300_bf_scaffold_385_curated_32
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
41683..42498
|
3-oxoacyl-ACP reductase (EC:1.1.1.100)
Short-chain dehydrogenase/reductase SDR n=2 Tax=Alicycliphilus denitrificans RepID=E8TQT3_ALIDB
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADU99057.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
|
|
SCNpilot_expt_300_bf_scaffold_385_curated_33
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
42694..43662
|
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TQT4_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAO27194.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
|
|
SCNpilot_expt_300_bf_scaffold_385_curated_34
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
43682..44206
|
carboxymuconolactone decarboxylase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003619469
Carboxymuconolactone decarboxylase {ECO:0000313|EMBL:GAD22476.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
carboxymuconolactone decarboxylase
|
|
SCNpilot_expt_300_bf_scaffold_385_curated_35
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(44214..45209)
|
Transcriptional regulator, LysR family n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GDC8_ALIDK
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AEB85957.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
|
|
SCNpilot_expt_300_bf_scaffold_385_curated_36
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
45344..46318
|
Putative secreted protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GDC7_ALIDK
hypothetical protein
Putative secreted protein {ECO:0000313|EMBL:AEB85956.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
|
|
SCNpilot_expt_300_bf_scaffold_385_curated_37
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
46346..47542
|
formyl-CoA transferase (EC:2.8.3.16)
Formyl-CoA transferase {ECO:0000313|EMBL:AEB85955.1}; EC=2.8.3.16 {ECO:0000313|EMBL:AEB85955.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Formyl-CoA transferase n=2 Tax=Alicycliphilus denitrificans RepID=E8TRG1_ALIDB
|
|
SCNpilot_expt_300_bf_scaffold_385_curated_38
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
47566..48261
|
Enoyl-CoA hydratase/isomerase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TRG2_ALIDB
enoyl-CoA hydratase
Enoyl-CoA hydratase {ECO:0000313|EMBL:GAO27199.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
|
|
SCNpilot_expt_300_bf_scaffold_385_curated_39
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
48346..49230
|
Carboxymethylenebutenolidase {ECO:0000313|EMBL:AEB85953.1}; EC=3.1.1.45 {ECO:0000313|EMBL:AEB85953.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Carboxymethylenebutenolidase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GDC4_ALIDK
|
|
SCNpilot_expt_300_bf_scaffold_385_curated_40
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
49341..50153
|
Zinc/iron permease n=2 Tax=Alicycliphilus denitrificans RepID=E8TRG4_ALIDB
zinc/iron permease
Zinc/iron permease {ECO:0000313|EMBL:GAO27201.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
|
|
SCNpilot_expt_300_bf_scaffold_385_curated_41
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(50242..50985)
|
Response regulator receiver n=2 Tax=Alicycliphilus denitrificans RepID=E8TRG5_ALIDB
LytTR family two component transcriptional regulator; K08083 two-component system, LytT family, response regulator AlgR
LytTR family two component transcriptional regulator {ECO:0000313|EMBL:GAO27202.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
|
|
SCNpilot_expt_300_bf_scaffold_385_curated_42
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(51024..51761)
|
Phosphoserine phosphatase SerB {ECO:0000313|EMBL:ADU99067.1}; EC=3.1.3.3 {ECO:0000313|EMBL:ADU99067.1};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Phosphoserine phosphatase SerB n=2 Tax=Alicycliphilus denitrificans RepID=E8TRG6_ALIDB
|
|
SCNpilot_expt_300_bf_scaffold_385_curated_43
Candidatus Accumulibacter sp. SK-12, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
51825..52070
|
hypothetical protein n=1 Tax=Pseudomonas fluorescens RepID=UPI0003702BE5
Putative regulator PrlF {ECO:0000313|EMBL:EXI67555.1}; TaxID=1454001 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-12.;"
sporulation regulator-like protein
|
|
SCNpilot_expt_300_bf_scaffold_385_curated_44
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
52076..52474
|
PIN domain nucleic acid-binding-like protein n=1 Tax=Candidatus Symbiobacter mobilis CR RepID=U5N8H3_9BURK
PIN domain nucleic acid-binding-like protein
Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
|
|
SCNpilot_expt_300_bf_scaffold_385_curated_45
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(52503..53180)
|
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TRG8_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAO27205.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
|
|
SCNpilot_expt_300_bf_scaffold_385_curated_46
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(53202..56693)
|
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-]
Transcription-repair-coupling factor n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TRG9_ALIDB
|
|
SCNpilot_expt_300_bf_scaffold_385_curated_47
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
56770..57618
|
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; K00991 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493};; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000256|HAMAP-Rule:MF_00108}; MEP cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GDB7_ALIDK
|
|
SCNpilot_expt_300_bf_scaffold_385_curated_48
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
57639..58124
|
2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; K01770 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPS {ECO:0000256|HAMAP-Rule:MF_00107};; EC=4.6.1.12 {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrifi
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=2 Tax=Alicycliphilus denitrificans RepID=E8TRH1_ALIDB
|
|
SCNpilot_expt_300_bf_scaffold_385_curated_49
uncultured bacterium, Bacteria
|
Not on your lists |
comp(58238..59233)
|
Extra-cytoplasmic solute receptor n=1 Tax=uncultured bacterium RepID=K2DX15_9BACT
Extra-cytoplasmic solute receptor {ECO:0000313|EMBL:EKD98368.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
extra-cytoplasmic solute receptor family protein
|
|
SCNpilot_expt_300_bf_scaffold_385_curated_50
Burkholderiaceae bacterium 16, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(59274..59753)
|
fabG; 3-oxoacyl-ACP reductase (EC:1.1.1.100)
3-oxoacyl-[acyl-carrier protein] reductase n=3 Tax=Bordetella bronchiseptica RepID=K0MJN5_BORBM
3-oxoacyl-ACP reductase {ECO:0000313|EMBL:KJK19768.1}; TaxID=1619952 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 16.;"
|
|
SCNpilot_expt_300_bf_scaffold_385_curated_51
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(59750..59995)
|
3-oxoacyl-[acyl-carrier protein] reductase {ECO:0000313|EMBL:CAE42072.1}; EC=1.1.1.100 {ECO:0000313|EMBL:CAE42072.1};; TaxID=257313 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251).;"
3-oxoacyl-[acyl-carrier protein] reductase n=30 Tax=Bordetella RepID=F4LB97_BORPC
fabG; 3-oxoacyl-ACP reductase
|
|
SCNpilot_expt_300_bf_scaffold_385_curated_52
Bordetella parapertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(60033..60494)
|
Uncharacterized protein n=4 Tax=Bordetella RepID=K0M920_BORPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCJ49471.1}; TaxID=1208660 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella parapertussis (strain Bpp5).;"
|
|
SCNpilot_expt_300_bf_scaffold_385_curated_53
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(60524..61615)
|
hypothetical protein n=1 Tax=Massilia niastensis RepID=UPI0003693B0B
Tax=GWA2_Rhodocyclales_65_20_curated
|
|
SCNpilot_expt_300_bf_scaffold_385_curated_54
uncultured bacterium, Bacteria
|
Not on your lists |
comp(61623..62810)
|
Acyl-CoA dehydrogenase protein n=1 Tax=uncultured bacterium RepID=K2EE38_9BACT
Acyl-CoA dehydrogenase protein {ECO:0000313|EMBL:EKD96784.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
acyl-CoA dehydrogenase domain-containing protein
|
|
SCNpilot_expt_300_bf_scaffold_385_curated_55
uncultured bacterium, Bacteria
|
Not on your lists |
63025..63999
|
LysR family transcriptional regulator n=1 Tax=uncultured bacterium RepID=K2DF97_9BACT
LysR family transcriptional regulator {ECO:0000313|EMBL:EKD96787.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
LysR family transcriptional regulator
|
|
SCNpilot_expt_300_bf_scaffold_385_curated_56
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(64010..65167)
|
Thiolase n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WL19_VEREI
thiolase
Thiolase {ECO:0000313|EMBL:ABM58326.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
|
|
SCNpilot_expt_300_bf_scaffold_385_curated_57
Bordetella parapertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(65187..65570)
|
Uncharacterized protein n=36 Tax=Bordetella RepID=F4LB95_BORPC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCJ49473.1}; TaxID=1208660 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella parapertussis (strain Bpp5).;"
|
|
SCNpilot_expt_300_bf_scaffold_385_curated_58
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
65755..65949
|
L-carnitine dehydratase/bile acid-inducible protein F n=2 Tax=Alicycliphilus denitrificans RepID=E8U021_ALIDB
l-carnitine dehydratase/bile acid-inducible protein f
Formyl-CoA transferase {ECO:0000313|EMBL:GAO24615.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
|
|
SCNpilot_expt_300_bf_scaffold_385_curated_59
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(65984..67531)
|
ATP-binding region atpase domain protein; K07638 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
ATP-binding region ATPase domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TRH2_ALIDB
|
|
SCNpilot_expt_300_bf_scaffold_385_curated_60
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(67604..68335)
|
Response regulator receiver n=2 Tax=Alicycliphilus denitrificans RepID=E8TRH3_ALIDB
winged helix family two component transcriptional regulator; K07659 two-component system, OmpR family, phosphate regulon response regulator OmpR
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:AEB85943.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
|