ggKbase home page

SCNpilot_expt_300_bf_scaffold_385_curated_83

Organism: scnpilot_dereplicated_Alicycliphilus_1

near complete RP 50 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38
Location: comp(90838..93246)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TRJ1_ALIDB similarity UNIREF
DB: UNIREF100
  • Identity: 98.1
  • Coverage: 802.0
  • Bit_score: 1517
  • Evalue 0.0
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 98.3
  • Coverage: 802.0
  • Bit_score: 1518
  • Evalue 0.0
RNA polymerase sigma factor rpod; K03086 RNA polymerase primary sigma factor similarity KEGG
DB: KEGG
  • Identity: 98.1
  • Coverage: 802.0
  • Bit_score: 1517
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Alicycliphilus sp. B1 → Alicycliphilus → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2409
ATGCCCGTTCAAAAGTCCGCGAAGTCGCCCAAGCCCGCCTCTGGCACCGCTGCGAAGGCCTCCTCAAAAGCCGCAACCCCTGTGAAAACCGCCGCCAAGGCGCCCGTGAAAGCAGCCGCCGCCAAGGCCGCCGACGCCGCGCCCAAGGCCGTGACGAAAGTCAAGACCGTGTCAACGCCCAAAACCCCTGCCGAGTTGGCGAAAGCCGCCGATGAACTGCTGAAGAAAAAACCCGCGCGCGCGCCCAAGGCCGCCGCCGCGCAGGCCGAAGCCGCCGAGGAAGCGCCCAAGAAGAAGCCCGGCCGCCCCGCCAAGGCCGCCGGCAGCGCCACGGCCGCCGCCAAGGCCCCCGCCAAGCGCGGCCGCAAGCCCAAGGCCAAGGAAGAGGGCCTGGAGGACGACGCCGACCTGTCCGACATCGAGGCGGAACTCGAAGGCGAACCCGAAGTGCCCGAGGCCACGGCCGAGGCCGCGCCCGCCGAGAAGGCCAAGCCCCTGCGCATGAAGATCAGCAAGGCCAAGGAACGCGCCTTGATGAAGGAATTCGGCCTGGACGAGACGGTGCTGTCCGAAGAGGACATGGCCAAGCGCCGCTCGCAGCTCAAGAAGCTGATCACCCTGGGCAAGACCCGCGGCTACCTGACGCAGGTGGAAATCTCCGACCATCTGCCCGACAAGCTGGTGGACGCCGAGACCATGGAAGTCGTGGTCGCCATGCTGGGCGACATGGGCGTGGCGGTGTACGAGCAGACGCCCGACGCCGAGACCCTGTTCCAGAACAACGTGGCGCCCACGGCCACCACCGTGGAAGAGGCCGAGGAAGAGGCCGAGGCGGCCCTGTCCACCGTGGACAGCGAATTCGGCCGCACCACCGACCCCGTGCGCATGTACATGCGCGAGATGGGCACGGTGGAGCTGCTCACGCGCGAGGGCGAGATCGAGATCGCCAAGCGCATCGAGGGCGGCCTGATGGACATGATGGAGGCCATCAGCGCATCGCCCGCCACGATCGCCGAGATCCTCAACATGGGCGAGGAAATCCGTGAGGGCAAGGTGGTCATCTCCACCGTGGTCGACGGCTTCTCCAACCCCGAGGAGGCCGACGACTACGTGGCCGAGGAAGACTTCGACGAATACGACGAAGAGGACGACGACGACGGCAAGGGCGGCTCCAAGGCCATGACCCGGCTGCTGGAAAAGCTCAAGACCGAGGCCCTGGACCGCTTCGACGAGCTGCGCTCGCTGTTCGAGAAGATGCACAAGATCTACGACAAGGAGGGCTACGGCAGCCCGGCGTACATGAAGGTGCAGCACGAGATCTCGTCCAAGCTGATGACCATCCGCTTCACCGCCAAGACCATCGAGAAGCTGTGCGACATGGTGCGCGCCCAGGTGGACGACGTGCGCAAGAAGGAGCGCGAGCTGCGCCGCATCATCGTGGACAAGTGCGGCATGCCGCAGGAGACCTTCATCAAGGAATTCCCGTCCAACCTGCTGAACCTGCAATGGGTGGAGAAGCAGGCCGCCGCCGGCAAGCCCTGGAGCGCCGTGATGCAGCGCAACATCCCGCCGATCCAGGAGCTGCAGCAGCACCTGATCGACCTGCAGTCGCGCGTGGTGGTGCCGCTCGCCGAGCTCAAGGCGATCAACAAGCGCATGAACCAGGGCGAGGCCAATTCGCGCGACGCCAAGAAGGAGATGATCGAGGCCAACCTGCGCCTGGTGATCTCCATCGCCAAGAAGTACACCAACCGCGGCCTGCAGTTCCTGGACCTGATCCAGGAGGGCAACATCGGCCTCATGAAGGCCGTGGACAAGTTCGAATACCGCCGCGGCTACAAGTTCTCGACCTACGCGACGTGGTGGATCCGCCAGGCGATCACACGATCCATCGCGGATCAAGCTCGAACCATCCGCATCCCGGTGCACATGATCGAGACCATCAACAAGATGAACCGCATCAGCCGCCAGCACCTGCAGGAGTTCGGCTTCGAGCCCGATGCAAGCATCCTGGCCGCCAAGATGGAGATCCCAGAGGACAAGATCCGCAAGATCATGAAGATCGCCAAGGAGCCGATCTCGATGGAAACCCCCATCGGCGACGACGACGACAGCCACCTGGGCGACTTCATCGAGGACAGCAACAACACCGCGCCCATCGACGCCGCCATGCAGGCCGGCCTGCGCGACGTGGTCAAGGACATCCTCGACGGCCTGACCCCGCGCGAGGCCAAGGTGCTGCGCATGCGCTTCGGCATCGAGATGAGCACCGACCACACGCTGGAGGAAGTGGGCAAGCAGTTCGACGTGACGCGCGAGCGCATCCGCCAGATCGAGGCCAAGGCGCTGCGCAAGCTCAAGCATCCCAGCCGCTCGGACAAGCTGCGCAGCTTCATCGACTCGCTGTAA
PROTEIN sequence
Length: 803
MPVQKSAKSPKPASGTAAKASSKAATPVKTAAKAPVKAAAAKAADAAPKAVTKVKTVSTPKTPAELAKAADELLKKKPARAPKAAAAQAEAAEEAPKKKPGRPAKAAGSATAAAKAPAKRGRKPKAKEEGLEDDADLSDIEAELEGEPEVPEATAEAAPAEKAKPLRMKISKAKERALMKEFGLDETVLSEEDMAKRRSQLKKLITLGKTRGYLTQVEISDHLPDKLVDAETMEVVVAMLGDMGVAVYEQTPDAETLFQNNVAPTATTVEEAEEEAEAALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEGGLMDMMEAISASPATIAEILNMGEEIREGKVVISTVVDGFSNPEEADDYVAEEDFDEYDEEDDDDGKGGSKAMTRLLEKLKTEALDRFDELRSLFEKMHKIYDKEGYGSPAYMKVQHEISSKLMTIRFTAKTIEKLCDMVRAQVDDVRKKERELRRIIVDKCGMPQETFIKEFPSNLLNLQWVEKQAAAGKPWSAVMQRNIPPIQELQQHLIDLQSRVVVPLAELKAINKRMNQGEANSRDAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQHLQEFGFEPDASILAAKMEIPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDSNNTAPIDAAMQAGLRDVVKDILDGLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLKHPSRSDKLRSFIDSL*