ggKbase home page

SCNpilot_expt_300_bf_scaffold_540_curated_24

Organism: scnpilot_dereplicated_Alicycliphilus_1

near complete RP 50 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38
Location: comp(23952..25250)

Top 3 Functional Annotations

Value Algorithm Source
Anti-FecI sigma factor, FecR n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UV22_VARPE similarity UNIREF
DB: UNIREF100
  • Identity: 47.8
  • Coverage: 433.0
  • Bit_score: 353
  • Evalue 2.60e-94
anti-FecI sigma factor FecR similarity KEGG
DB: KEGG
  • Identity: 47.8
  • Coverage: 433.0
  • Bit_score: 353
  • Evalue 8.00e-95
Anti-FecI sigma factor, FecR {ECO:0000313|EMBL:ADU37534.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 47.8
  • Coverage: 433.0
  • Bit_score: 353
  • Evalue 3.60e-94

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1299
ATGACCGCCCAGGCCGCCGCATCTTCGCCGCTGCTCGCGAGCTTTCGCGACAGCTACCGCGATCTCGTGCGCTACCTCGCGCGGCGCACCGGCTGCGCCGACGAGGCGCGCGACGTGGCGCACGACACCTGGCTGCGCCTGGCCGACATGGACCTGCGCGGCGCACCGCCCGTGCAGTGCGAGGCAGAGGCGCGTGCCTACGTGTTCACCATGGCGCGCAACCTCGTCATCGACCGCCGCCGCCACGAGGGCATGGCGCAGCGCCATGCGCACGTGCTGGCCGCGCCGGGGCAGGGGCCCGACGAGACCGAGGCGCTGATGTACCGCCAGGCCATAGCCGCGGTCGAGGCGGCTCTCGCCACCGTGCCCGAGCGAACGCGCCAGGTCTTCCTGCGCCACCGCATCAACGGCGAGGACCAGGGCGCGCTCGCGGCCGAGTTCGGTATCTCGCGCAACATGGTCGAGCGCGACGTGATGCTGGCCATGGACCGTGTGCAGGCCGCCATGGAGCGCTGGCACGGCAGCGCGCCCACCGCGCGCCGCGGGCGGCGCCGCGCGCTCTCGGCGCTGCTGGGCGTGGCGGGCCTGTCCGTCTCGGGGGCGCTGGCATGGCGCTGGTGGCGCACCGCCGTGCCCGCATGGCAGCGCGCCGCCGCCACCGGCCATGCGCAGATGCTGCGCCAGCCGCTGCCCGACGGCGGCAGCGTCACGCTCGATGCGCAAAGCCGCGTGCAGCTTGCCTACTACGCCGCGCGGCGCAGCGCCCGCCTGCTGGCAGGCGCTGCCTTCTTCGACGTCGTGCGGGACGAGGATCGGCCCTTCGTCGTGGACGTGCCCTGCGAACAGGGCGCGGTGCGCATCACCGTGCTGGGCACGCGCTTCGGCGTGGAGCGGCTGCCGGGCGATGCGGTGGAGGTGCAGGTCGAATCGGGCCTGGTGCGCGTGGAATCGCTCGGCGCCGATGGCGGCGCGCGGACCCTGCGCGAGTTGCGCGCCGGCGAGGCCATGCGCATTTCGGCAGAGCCGGATGACACTCCGCCGCGCGTGCGCTCGGGCGTGGCGGCCGCGCCCTGGCGCCAGGGCATGGTGGCCTTCACCGACGTGCCTCTGGGCGAGGCGGTCGAACGCCTGCGCCGCTATCTGCCCCGTCCGGTGCTGGTCGAGCCGCAGGCCGCTCTATTGCGCCTGTCGGGCCAGGTGCGCATCGCCCAGGCCGAGGACTTCGTGCGTGCCCTGCCGTCCGTCGTGCCGGTACGGGTGCAGCTGGCGGCAGGACGCTGGAGCGTCGCGGCGCGCTGA
PROTEIN sequence
Length: 433
MTAQAAASSPLLASFRDSYRDLVRYLARRTGCADEARDVAHDTWLRLADMDLRGAPPVQCEAEARAYVFTMARNLVIDRRRHEGMAQRHAHVLAAPGQGPDETEALMYRQAIAAVEAALATVPERTRQVFLRHRINGEDQGALAAEFGISRNMVERDVMLAMDRVQAAMERWHGSAPTARRGRRRALSALLGVAGLSVSGALAWRWWRTAVPAWQRAAATGHAQMLRQPLPDGGSVTLDAQSRVQLAYYAARRSARLLAGAAFFDVVRDEDRPFVVDVPCEQGAVRITVLGTRFGVERLPGDAVEVQVESGLVRVESLGADGGARTLRELRAGEAMRISAEPDDTPPRVRSGVAAAPWRQGMVAFTDVPLGEAVERLRRYLPRPVLVEPQAALLRLSGQVRIAQAEDFVRALPSVVPVRVQLAAGRWSVAAR*