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SCNpilot_expt_300_bf_scaffold_540_curated

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_540_curated_1
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..855)
DNA (855bp) protein (285aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TPY7_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU98921.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_540_curated_2
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(872..1360)
DNA (489bp) protein (163aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TPY6_ALIDB
hypothetical protein
Small integral membrane protein {ECO:0000313|EMBL:GAO27022.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_540_curated_3
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1491..1706)
DNA (216bp) protein (72aa)
Type II secretion system protein E n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TPY5_ALIDB
type II secretion system protein E; K02454 general secretion pathway protein E
Type II secretion system protein E {ECO:0000313|EMBL:GAO27021.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_540_curated_4
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1821..2444
DNA (624bp) protein (208aa)
Uncharacterized protein (Fragment) n=2 Tax=Yersinia pestis RepID=I7Q0U1_YERPE
Uncharacterized protein {ECO:0000313|EMBL:EWS63719.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
SCNpilot_expt_300_bf_scaffold_540_curated_5
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3177..3956)
DNA (780bp) protein (260aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TPY4_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB86066.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_540_curated_6
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3940..4467)
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GEA5_ALIDK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB86067.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_540_curated_7
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(4561..5787)
DNA (1227bp) protein (409aa)
hypothetical protein n=1 Tax=Burkholderia bryophila RepID=UPI000374D34E
Uncharacterized protein {ECO:0000313|EMBL:KIJ72302.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_540_curated_8
Pseudomonas syringae, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5788..6192)
DNA (405bp) protein (135aa)
DNA adenine methylase (EC:2.1.1.72); K06223 DNA adenine methylase [EC:2.1.1.72]
hypothetical protein n=1 Tax=Pseudomonas RepID=UPI000368B645
DNA adenine methylase {ECO:0000313|EMBL:EGH27737.1}; Flags: Fragment;; TaxID=629262 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas syringae.;" source="Pseudomonas syringae pv. japonica str. M301072.;"
SCNpilot_expt_300_bf_scaffold_540_curated_9
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

6721..8061
DNA (1341bp) protein (447aa)
hypothetical protein n=1 Tax=Burkholderia bryophila RepID=UPI00036A2D2A
Uncharacterized protein {ECO:0000313|EMBL:KIJ72301.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
type III restriction-modification system methyltransferase
SCNpilot_expt_300_bf_scaffold_540_curated_10
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8148..8993)
DNA (846bp) protein (282aa)
TatD-related deoxyribonuclease; K03424 TatD DNase family protein [EC:3.1.21.-]
TatD-related deoxyribonuclease n=2 Tax=Alicycliphilus denitrificans RepID=E8TPY2_ALIDB
TatD-related deoxyribonuclease {ECO:0000313|EMBL:AEB86068.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_540_curated_11
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9004..9201)
DNA (198bp) protein (66aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TPY1_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU98915.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_540_curated_12
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9235..9543)
DNA (309bp) protein (103aa)
Regulatory protein ArsR n=2 Tax=Alicycliphilus denitrificans RepID=E8TPY0_ALIDB
ArsR family transcriptional regulator
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:AEB86070.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_540_curated_13
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9674..10048
DNA (375bp) protein (125aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Alkylhydroperoxidase like protein, AhpD family n=2 Tax=Alicycliphilus denitrificans RepID=E8TPX9_ALIDB
alkylhydroperoxidase
SCNpilot_expt_300_bf_scaffold_540_curated_14
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10153..11052
DNA (900bp) protein (300aa)
Peptidase S1 and S6 chymotrypsin/Hap n=2 Tax=Alicycliphilus denitrificans RepID=E8TPX8_ALIDB
peptidase s1 and s6 chymotrypsin/hap
Peptidase S1 and S6 chymotrypsin/Hap {ECO:0000313|EMBL:AEB86072.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_540_curated_15
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11067..12098
DNA (1032bp) protein (344aa)
ATPase; K03924 MoxR-like ATPase [EC:3.6.3.-]
ATPase associated with various cellular activities AAA_3 n=2 Tax=Alicycliphilus denitrificans RepID=E8U2A7_ALIDB
MoxR-like ATPase {ECO:0000313|EMBL:GAO27012.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_540_curated_16
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12091..13059
DNA (969bp) protein (323aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8U2A6_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAO27011.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_540_curated_17
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13082..14128
DNA (1047bp) protein (349aa)
von Willebrand factor type A n=2 Tax=Alicycliphilus denitrificans RepID=E8U2A5_ALIDB
von Willebrand factor type A; K07114 uncharacterized protein
von Willebrand factor type A {ECO:0000313|EMBL:GAO27010.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_540_curated_18
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14246..16243)
DNA (1998bp) protein (666aa)
Acetyl-coenzyme A synthetase {ECO:0000256|HAMAP-Rule:MF_01123}; Short=AcCoA synthetase {ECO:0000256|HAMAP-Rule:MF_01123};; Short=Acs {ECO:0000256|HAMAP-Rule:MF_01123};; EC=6.2.1.1 {ECO:0000256|HAMAP-Rule:MF_01123};; Acetate--CoA ligase {ECO:0000256|HAMAP-Rule:MF_01123}; Acyl-activating enzyme {ECO:0000256|HAMAP-Rule:MF_01123}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
acetate/CoA ligase; K01895 acetyl-CoA synthetase [EC:6.2.1.1]
Acetyl-coenzyme A synthetase n=2 Tax=Alicycliphilus denitrificans RepID=E8U2A4_ALIDB
SCNpilot_expt_300_bf_scaffold_540_curated_19
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16898..18202
DNA (1305bp) protein (435aa)
glycine/betaine/L-proline ABC transporter ATPase (EC:3.6.3.32); K02000 glycine betaine/proline transport system ATP-binding protein [EC:3.6.3.32]
Glycine betaine/L-proline ABC transporter, ATPase subunit {ECO:0000313|EMBL:AEB86077.1}; EC=3.6.3.32 {ECO:0000313|EMBL:AEB86077.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Glycine betaine/L-proline ABC transporter, ATPase subunit n=2 Tax=Alicycliphilus denitrificans RepID=E8U2A3_ALIDB
SCNpilot_expt_300_bf_scaffold_540_curated_20
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18199..19311
DNA (1113bp) protein (371aa)
Binding-protein-dependent transport systems inner membrane component n=2 Tax=Alicycliphilus denitrificans RepID=E8U2A2_ALIDB
ABC transporter permease; K02001 glycine betaine/proline transport system permease protein
Binding-protein-dependent transport system inner membrane protein {ECO:0000313|EMBL:GAO27007.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_540_curated_21
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19388..20398
DNA (1011bp) protein (337aa)
Substrate-binding region of ABC-type glycine betaine transport system n=2 Tax=Alicycliphilus denitrificans RepID=E8U2A1_ALIDB
glycine/betaine ABC transporter substrate-binding protein; K02002 glycine betaine/proline transport system substrate-binding protein
ABC-type glycine betaine transport, periplasmic subunit {ECO:0000313|EMBL:AEB86079.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_540_curated_22
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20586..21362
DNA (777bp) protein (259aa)
Cyclic nucleotide-binding protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U2A0_ALIDB
cyclic nucleotide-binding protein
Transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:AEB86080.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_540_curated_23
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21428..23812)
DNA (2385bp) protein (795aa)
Ferrichrome-iron receptor FhuA n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HTQ6_RUBGI
fhuA; ferrichrome-iron receptor FhuA; K02014 iron complex outermembrane recepter protein
Ferrichrome-iron receptor FhuA {ECO:0000313|EMBL:BAL96393.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
SCNpilot_expt_300_bf_scaffold_540_curated_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23952..25250)
DNA (1299bp) protein (433aa)
Anti-FecI sigma factor, FecR n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UV22_VARPE
anti-FecI sigma factor FecR
Anti-FecI sigma factor, FecR {ECO:0000313|EMBL:ADU37534.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_300_bf_scaffold_540_curated_25
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25280..25786)
DNA (507bp) protein (169aa)
fumarate hydratase, class II (EC:4.2.1.2); K01679 fumarate hydratase, class II [EC:4.2.1.2]
Fumarate hydratase class II {ECO:0000256|HAMAP-Rule:MF_00743}; Short=Fumarase C {ECO:0000256|HAMAP-Rule:MF_00743};; EC=4.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00743};; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
Fumarate hydratase class II n=2 Tax=Alicycliphilus denitrificans RepID=E8U299_ALIDB
SCNpilot_expt_300_bf_scaffold_540_curated_26
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25788..26606)
DNA (819bp) protein (273aa)
fumarate hydratase, class ii; K01679 fumarate hydratase, class II [EC:4.2.1.2]
Fumarate hydratase class II {ECO:0000256|HAMAP-Rule:MF_00743}; Short=Fumarase C {ECO:0000256|HAMAP-Rule:MF_00743};; EC=4.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00743};; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
Fumarate hydratase class II n=2 Tax=Alicycliphilus denitrificans RepID=E8U299_ALIDB
SCNpilot_expt_300_bf_scaffold_540_curated_27
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26775..28334
DNA (1560bp) protein (520aa)
hydro-lyase, fe-s type, tartrate/fumarate subfamily, alpha subunit; K01676 fumarate hydratase, class I [EC:4.2.1.2]
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8U298_ALIDB
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit {ECO:0000313|EMBL:ADU98902.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_540_curated_28
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28411..29034)
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T0K2_ACIDE
Uncharacterized protein {ECO:0000313|EMBL:EER62020.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
hypothetical protein
Displaying 28 items

View Taxonomy