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SCNpilot_cont_1000_p_scaffold_375_curated

Search features with annotation key words

Displaying items 1-30 of 76 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_375_curated_1

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307..996
DNA (690bp) protein (230aa)
Protein PetR id=4886536 bin=GWC2_Alphaproteobacteria_42_16 species=Thalassiobium sp. R2A62 genus=Thalassobium taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
DNA-binding response regulator PetR {ECO:0000313|EMBL:EKE09747.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
response regulator; K07659 two-component system, OmpR family, phosphate regulon response regulator OmpR
SCNpilot_cont_1000_p_scaffold_375_curated_2

Not on your lists

993..2312
DNA (1320bp) protein (440aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
sensor histidine kinase (EC:2.7.3.-); K07638 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2EHU8_9BACT
SCNpilot_cont_1000_p_scaffold_375_curated_3
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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2912..3802
DNA (891bp) protein (297aa)
Putative transposase YhgA family protein id=4838453 bin=GWC2_Alphaproteobacteria_42_16 species=unknown genus=Rickettsia taxon_order=Rickettsiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
transposase
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
SCNpilot_cont_1000_p_scaffold_375_curated_4
unknown

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3873..4013
DNA (141bp) protein (47aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_375_curated_5

Not on your lists

3979..4926
DNA (948bp) protein (316aa)
ABC transporter, periplasmic substrate-binding protein id=4886533 bin=GWC2_Alphaproteobacteria_42_16 species=unknown genus=unknown taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
Uncharacterized protein {ECO:0000313|EMBL:EKE09750.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein; K01989 putative ABC transport system substrate-binding protein
SCNpilot_cont_1000_p_scaffold_375_curated_6
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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4941..5882
DNA (942bp) protein (314aa)
ABC-type transporter, periplasmic component id=4886532 bin=GWC2_Alphaproteobacteria_42_16 species=unknown genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
hypothetical protein; K01989 putative ABC transport system substrate-binding protein
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_375_curated_7
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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6069..6959
DNA (891bp) protein (297aa)
UPF0042 nucleotide-binding protein amb4396 id=4886531 bin=GWC2_Alphaproteobacteria_42_16 species=unknown genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
glmZ(sRNA)-inactivating NTPase; K06958 UPF0042 nucleotide-binding protein
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_375_curated_8
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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6956..7372
DNA (417bp) protein (139aa)
PTS system fructose subfamily transporter subunit IIA; K02793 PTS system, mannose-specific IIA component [EC:2.7.1.69]
PTS system fructose subfamily IIA component id=4886530 bin=GWC2_Alphaproteobacteria_42_16 species=Methylocella silvestris genus=Methylocella taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_375_curated_9

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7356..7637
DNA (282bp) protein (94aa)
Phosphotransferase system, phosphocarrier protein HPr id=4886529 bin=GWC2_Alphaproteobacteria_42_16 species=Asticcacaulis excentricus genus=Asticcacaulis taxon_order=Caulobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
Phosphocarrier, HPr family {ECO:0000313|EMBL:EKE09718.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
phosphotransferase system, phosphocarrier protein HPr; K11189 phosphocarrier protein
SCNpilot_cont_1000_p_scaffold_375_curated_10
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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7631..8653
DNA (1023bp) protein (341aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2EVT2_9BACT
putative L-asparaginase II
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_375_curated_11
unknown

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8821..9069
DNA (249bp) protein (83aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_375_curated_12
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9102..10304)
DNA (1203bp) protein (401aa)
aspB; aspartate aminotransferase (EC:2.6.1.1); K00812 aspartate aminotransferase [EC:2.6.1.1]
Aspartate aminotransferase id=4220261 bin=GWC2_Alphaproteobacteria_42_16 species=Tistrella mobilis genus=Tistrella taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_375_curated_13
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10529..11044
DNA (516bp) protein (172aa)
AraC family transcriptional regulator (EC:2.1.1.63); K10778 AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
ADA regulatory protein, putative id=4220263 bin=GWC2_Alphaproteobacteria_42_16 species=Rhodospirillum photometricum genus=Rhodospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_375_curated_14

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11114..11530
DNA (417bp) protein (139aa)
Nucleoside diphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00451, ECO:0000256|RuleBase:RU004013}; Short=NDK {ECO:0000256|HAMAP-Rule:MF_00451};; Short=NDP kinase {ECO:0000256|HAMAP-Rule:MF_00451};; EC=2.7.4.6 {ECO:0000256|HAMAP-Rule:MF_00451, ECO:0000256|RuleBase:RU004013};; Nucleoside-2-P kinase {ECO:0000256|HAMAP-Rule:MF_00451}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ndk; nucleoside diphosphate kinase (EC:2.7.4.6)
Nucleoside diphosphate kinase n=1 Tax=uncultured bacterium RepID=K2EJ90_9BACT
SCNpilot_cont_1000_p_scaffold_375_curated_15
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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11640..12098
DNA (459bp) protein (153aa)
Phosphatidylethanolamine-binding protein id=4220270 bin=GWC2_Alphaproteobacteria_42_16 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
phosphatidylethanolamine-binding protein; K06910
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_375_curated_16
unknown

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12266..12604
DNA (339bp) protein (113aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_375_curated_17
Trichomonas vaginalis, Trichomonas, Trichomonadida, Eukaryota

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12672..13994
DNA (1323bp) protein (441aa)
Putative uncharacterized protein n=1 Tax=Trichomonas vaginalis RepID=A2E5Y7_TRIVA
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:EAY11944.1}; TaxID=5722 species="Eukaryota; Parabasalia; Trichomonadida; Trichomonadidae; Trichomonas.;" source="Trichomonas vaginalis.;"
SCNpilot_cont_1000_p_scaffold_375_curated_18
unknown

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14244..14363
DNA (120bp) protein (40aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_375_curated_19
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14380..14685)
DNA (306bp) protein (102aa)
id=2555870 bin=GWC2_Alphaproteobacteria_42_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_375_curated_20
unknown

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15131..16024
DNA (894bp) protein (298aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_375_curated_21
Enhygromyxa salina, Enhygromyxa, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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16255..16710
DNA (456bp) protein (152aa)
Uncharacterized conserved protein n=1 Tax=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) RepID=Q4UK00_RICFE
Uncharacterized protein {ECO:0000313|EMBL:KIG13905.1}; TaxID=215803 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Enhygromyxa.;" source="Enhygromyxa salina.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_375_curated_22
R_Alphaproteobacteria_41_14, Alphaproteobacteria, Proteobacteria, Bacteria

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17018..17842
DNA (825bp) protein (275aa)
response regulator, CheY; response regulator rcp1 id=2997993 bin=GWA1_Alphaproteobacteria_45_9 species=Candidatus Odyssella thessalonicensis genus=Candidatus Odyssella taxon_order=Rickettsiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA1_Alphaproteobacteria_45_9 organism_group=Alphaproteobacteria organism_desc=Good marker genes; small
response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
Tax=RIFCSPHIGHO2_01_FULL_Alphaproteobacteria_41_14_curated
SCNpilot_cont_1000_p_scaffold_375_curated_23
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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17972..19201
DNA (1230bp) protein (410aa)
PAS/PAC sensor signal transduction histidine kinase (EC:2.7.13.3)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=316067 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M794_GEODF
SCNpilot_cont_1000_p_scaffold_375_curated_24
Moorea producens, Moorea, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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19195..20433
DNA (1239bp) protein (413aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=489825 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Moorea.;" source="Moorea producens 3L.;"
PAS/PAC sensor signal transduction histidine kinase (EC:2.7.13.3)
PAS domain S-box protein n=1 Tax=Moorea producens 3L RepID=F4XNI7_9CYAN
SCNpilot_cont_1000_p_scaffold_375_curated_25
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(20454..21002)
DNA (549bp) protein (183aa)
hypothetical protein n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225B6E3
Uncharacterized protein {ECO:0000313|EMBL:AIL12827.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_cont_1000_p_scaffold_375_curated_26
unknown

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comp(20944..21330)
DNA (387bp) protein (129aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_375_curated_27
unknown

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21651..23030
DNA (1380bp) protein (460aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_375_curated_28
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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23108..24376
DNA (1269bp) protein (423aa)
major facilitator family transporter id=4018953 bin=GWC2_Alphaproteobacteria_42_16 species=Candidatus Odyssella thessalonicensis genus=Candidatus Odyssella taxon_order=Rickettsiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
major facilitator family transporter
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_375_curated_29

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24431..25747
DNA (1317bp) protein (439aa)
major facilitator family transporter id=4018955 bin=GWC2_Alphaproteobacteria_42_16 species=Candidatus Odyssella thessalonicensis genus=Candidatus Odyssella taxon_order=Rickettsiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
Major facilitator family transporter {ECO:0000313|EMBL:EKE09360.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_375_curated_30
Vibrio caribbeanicus, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

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25758..26204
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Vibrio caribbenthicus ATCC BAA-2122 RepID=E3BJD2_9VIBR
Uncharacterized protein {ECO:0000313|EMBL:EFP96701.1}; TaxID=796620 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio caribbeanicus ATCC BAA-2122.;"
Displaying items 1-30 of 76 in total

View Taxonomy