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SCNpilot_cont_1000_p_scaffold_1825_curated

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_1825_curated_1
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33..209)
DNA (177bp) protein (59aa)
id=4935062 bin=GWC2_Alphaproteobacteria_42_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_1825_curated_2

Not on your lists

comp(303..584)
DNA (282bp) protein (94aa)
DUF3018 id=71751 bin=ACD50 species=ACD50 genus=ACD50 taxon_order=ACD50 taxon_class=ACD50 phylum=OP11 tax=ACD50 organism_group=OP11 (Microgenomates) organism_desc=OP11
Uncharacterized protein {ECO:0000313|EMBL:EKD65485.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_cont_1000_p_scaffold_1825_curated_3
R_Alphaproteobacteria_41_14, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(985..1794)
DNA (810bp) protein (270aa)
id=3529620 bin=GWA1_Alphaproteobacteria_45_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA1_Alphaproteobacteria_45_9 organism_group=Alphaproteobacteria organism_desc=Good marker genes; small
Tax=RIFCSPHIGHO2_01_FULL_Alphaproteobacteria_41_14_curated
SCNpilot_cont_1000_p_scaffold_1825_curated_4
Simkania negevensis, Simkania, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(2071..2871)
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Simkania negevensis (strain ATCC VR-1471 / Z) RepID=F8L8A1_SIMNZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCB89024.1}; TaxID=331113 species="Bacteria; Chlamydiae; Chlamydiales; Simkaniaceae; Simkania.;" source="Simkania negevensis (strain ATCC VR-1471 / Z).;"
SCNpilot_cont_1000_p_scaffold_1825_curated_5

Not on your lists

3379..3759
DNA (381bp) protein (127aa)
OriT binding protein n=2 Tax=root RepID=F2Q6A0_9BACT
OriT binding protein {ECO:0000313|EMBL:AAY97954.1}; TaxID=1003194 species="other sequences; plasmids.;" source="Plasmid pMCBF1.;"
traK; TraK protein of DNA transfer system
SCNpilot_cont_1000_p_scaffold_1825_curated_6
unknown

Not on your lists

4045..5154
DNA (1110bp) protein (370aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1825_curated_7
unknown

Not on your lists

6253..6657
DNA (405bp) protein (135aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1825_curated_8
unknown

Not on your lists

6694..6930
DNA (237bp) protein (79aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1825_curated_9
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6927..7958)
DNA (1032bp) protein (344aa)
Putative family 20 transposase n=1 Tax=Methyloglobulus morosus KoM1 RepID=V5B109_9GAMM
Transposase {ECO:0000313|EMBL:AIL13840.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
transposase for insertion sequence element
SCNpilot_cont_1000_p_scaffold_1825_curated_10
Rickettsia africae, Rickettsia, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8379..8810)
DNA (432bp) protein (144aa)
DNA invertase Pin n=1 Tax=Rickettsia helvetica RepID=UPI000288C5F0
Site-specific recombinase, DNA invertase Pin-like protein
Site-specific recombinase, DNA invertase Pin-like protein {ECO:0000313|EMBL:ACP54021.1}; TaxID=347255 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group.;" source="Rickettsia africae (strain ESF-5).;"
SCNpilot_cont_1000_p_scaffold_1825_curated_11
unknown

Not on your lists

comp(9069..13289)
DNA (4221bp) protein (1407aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1825_curated_12
unknown

Not on your lists

comp(13377..13511)
DNA (135bp) protein (45aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1825_curated_13
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(13511..14971)
DNA (1461bp) protein (487aa)
Archaeal ATPase family protein n=1 Tax=Simkania negevensis (strain ATCC VR-1471 / Z) RepID=F8L6R5_SIMNZ
ATPase family protein; K06921
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
SCNpilot_cont_1000_p_scaffold_1825_curated_14
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15204..15383)
DNA (180bp) protein (60aa)
id=4935062 bin=GWC2_Alphaproteobacteria_42_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_1825_curated_15
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15658..19191
DNA (3534bp) protein (1178aa)
conjugal transfer relaxase TraA id=4935065 bin=GWC2_Alphaproteobacteria_42_16 species=Candidatus Odyssella thessalonicensis genus=Candidatus Odyssella taxon_order=Rickettsiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
Dtr system oriT relaxase
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_1825_curated_16
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19257..19865)
DNA (609bp) protein (203aa)
id=2547281 bin=GWC2_Alphaproteobacteria_42_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_1825_curated_17
unknown

Not on your lists

20183..20482
DNA (300bp) protein (100aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1825_curated_18
unknown

Not on your lists

20727..21104
DNA (378bp) protein (126aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1825_curated_19
Candidatus Amoebophilus asiaticus, Candidatus Amoebophilus, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

21280..21900
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Amoebophilus asiaticus (strain 5a2) RepID=B3ESQ7_AMOA5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACE06259.1}; TaxID=452471 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Amoebophilaceae; Candidatus Amoebophilus.;" source="Amoebophilus asiaticus (strain 5a2).;"
SCNpilot_cont_1000_p_scaffold_1825_curated_20

Not on your lists

22377..22673
DNA (297bp) protein (99aa)
Integration host factor subunit alpha n=1 Tax=uncultured bacterium RepID=K2EIE0_9BACT
Integration host factor subunit alpha {ECO:0000313|EMBL:EKE09237.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ihfA; integration host factor subunit alpha; K04764 integration host factor subunit alpha
SCNpilot_cont_1000_p_scaffold_1825_curated_21
unknown

Not on your lists

22919..23338
DNA (420bp) protein (140aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1825_curated_22
R_Gammaproteobacteria_38_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23473..24150
DNA (678bp) protein (226aa)
S2 family protease n=1 Tax=uncultured bacterium RepID=K2EHQ4_9BACT
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_38_11_curated
SCNpilot_cont_1000_p_scaffold_1825_curated_23
unknown

Not on your lists

24431..24994
DNA (564bp) protein (188aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1825_curated_24

Not on your lists

comp(25091..25306)
DNA (216bp) protein (72aa)
HicB family protein n=1 Tax=uncultured bacterium RepID=K2EJT2_9BACT
HicB family protein {ECO:0000313|EMBL:EKE09687.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
HicB family protein
SCNpilot_cont_1000_p_scaffold_1825_curated_25
unknown

Not on your lists

comp(25700..25816)
DNA (117bp) protein (39aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1825_curated_26
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26290..27192)
DNA (903bp) protein (301aa)
pirin n=1 Tax=Diplorickettsia massiliensis RepID=UPI00029B46CB
RepA replicase
Putative RepA replicase protein {ECO:0000313|EMBL:ADZ69033.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_cont_1000_p_scaffold_1825_curated_27
unknown

Not on your lists

comp(27245..27520)
DNA (276bp) protein (92aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1825_curated_28
Scytonema tolypothrichoides, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(27523..28215)
DNA (693bp) protein (231aa)
ParA n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI000381CBD7
ParA {ECO:0000313|EMBL:KIJ79792.1}; TaxID=1233231 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema tolypothrichoides VB-61278.;"
ParA-like protein; K03496 chromosome partitioning protein
SCNpilot_cont_1000_p_scaffold_1825_curated_29
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28343..29002)
DNA (660bp) protein (220aa)
Resolvase n=1 Tax=Magnetospirillum sp. SO-1 RepID=M2ZL43_9PROT
Resolvase {ECO:0000313|EMBL:ETW98541.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
resolvase
SCNpilot_cont_1000_p_scaffold_1825_curated_30
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29021..29524)
DNA (504bp) protein (168aa)
GCN5-related N-acetyltransferase n=1 Tax=Beggiatoa sp. PS RepID=A7C077_9GAMM
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:EDN67804.1}; TaxID=422289 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
N-acetyltransferase GCN5
Displaying items 1-30 of 32 in total

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