ggKbase home page

SCNpilot_cont_1000_p_scaffold_204_curated

Search features with annotation key words

Displaying items 1-30 of 107 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_204_curated_1
Corallococcus coralloides, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..1812
DNA (1812bp) protein (604aa)
DnaJ domain-containing protein n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8ML09_CORCM
DnaJ domain-containing protein
DnaJ domain-containing protein {ECO:0000313|EMBL:AFE06724.1}; TaxID=1144275 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus.;" source="Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086; / M2) (Myxococcus coralloides).;"
SCNpilot_cont_1000_p_scaffold_204_curated_2

Not on your lists

comp(1987..2799)
DNA (813bp) protein (271aa)
DSBA oxidoreductase n=1 Tax=uncultured bacterium RepID=K2EK08_9BACT
DSBA oxidoreductase {ECO:0000313|EMBL:EKE10558.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
com1; outer membrane protein
SCNpilot_cont_1000_p_scaffold_204_curated_3

Not on your lists

comp(2900..5071)
DNA (2172bp) protein (724aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
UvrD/REP helicase id=4920983 bin=GWC2_Alphaproteobacteria_42_16 species=Magnetospirillum gryphiswaldense genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
uvrD; DNA helicase II
SCNpilot_cont_1000_p_scaffold_204_curated_4
Rickettsia endosymbiont of Ixodes pacificus, Rickettsia, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5137..6276)
DNA (1140bp) protein (380aa)
Putative AAA+ superfamily ATPase n=1 Tax=Rickettsia japonica (strain ATCC VR-1363 / YH) RepID=G4KLI0_RICJY
Uncharacterized protein {ECO:0000313|EMBL:KJW02238.1}; TaxID=1133329 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia.;" source="Rickettsia endosymbiont of Ixodes pacificus.;"
putative AAA+ superfamily ATPase; K07133
SCNpilot_cont_1000_p_scaffold_204_curated_5

Not on your lists

6469..7080
DNA (612bp) protein (204aa)
Superoxide dismutase {ECO:0000256|RuleBase:RU000414}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000414};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
sodB; superoxide dismutase (EC:1.15.1.1); K04564 superoxide dismutase, Fe-Mn family [EC:1.15.1.1]
UPI00019278EF related cluster id=4920984 bin=GWC2_Alphaproteobacteria_42_16 species=Synechococcus sp. PCC 7502 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
SCNpilot_cont_1000_p_scaffold_204_curated_6
unknown

Not on your lists

7474..7863
DNA (390bp) protein (130aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_204_curated_7
unknown

Not on your lists

7885..8073
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_204_curated_8
unknown

Not on your lists

8155..8598
DNA (444bp) protein (148aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_204_curated_9
unknown

Not on your lists

8610..9011
DNA (402bp) protein (134aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_204_curated_10
unknown

Not on your lists

9076..9300
DNA (225bp) protein (75aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_204_curated_11
Syntrophobacter fumaroxidans, Syntrophobacter, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9424..10242
DNA (819bp) protein (273aa)
Putative uncharacterized protein n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LJF4_SYNFM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABK17556.1}; TaxID=335543 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophobacteraceae; Syntrophobacter.;" source="Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB).;"
SCNpilot_cont_1000_p_scaffold_204_curated_12
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10668..11627
DNA (960bp) protein (320aa)
Transcriptional regulator n=1 Tax=Oceanibaculum indicum P24 RepID=K2K7N7_9PROT
Uncharacterized protein {ECO:0000313|EMBL:AIL13735.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
regulatory helix-turn-helix protein, lysR family,ligand-binding protein, LysR family
SCNpilot_cont_1000_p_scaffold_204_curated_13
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11608..12723
DNA (1116bp) protein (372aa)
hypothetical protein n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225ACD0
Uncharacterized protein {ECO:0000313|EMBL:AIL12548.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
nitroreductase family protein family
SCNpilot_cont_1000_p_scaffold_204_curated_14
unknown

Not on your lists

13257..13553
DNA (297bp) protein (99aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_204_curated_15
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13522..16161
DNA (2640bp) protein (880aa)
Diguanylate cyclase (GGDEF) domain n=1 Tax=Chthonomonas calidirosea T49 RepID=S0ESB5_9BACT
diguanylate cyclase (GGDEF) domain
Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
SCNpilot_cont_1000_p_scaffold_204_curated_16
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16251..16871
DNA (621bp) protein (207aa)
Peptidase S16 lon-like protein id=3710593 bin=GWC2_Alphaproteobacteria_42_16 species=unknown genus=Jannaschia taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
peptidase S16, lon-like; K07157
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_204_curated_17
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16883..17071
DNA (189bp) protein (63aa)
UPF0434 protein ACD_16C00131G0002 n=1 Tax=uncultured bacterium RepID=K2DV22_9BACT
hypothetical protein; K09791 hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_204_curated_18
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17437..18519
DNA (1083bp) protein (361aa)
Putative uncharacterized protein id=2719349 bin=GWC2_Alphaproteobacteria_42_16 species=Chlorobium ferrooxidans genus=Chlorobium taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_204_curated_19

Not on your lists


18716..19972
DNA (1257bp) protein (419aa)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00127}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Histidyl-tRNA ligase id=2719342 bin=GWC2_Alphaproteobacteria_42_16 species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
histidyl-tRNA synthetase
SCNpilot_cont_1000_p_scaffold_204_curated_20

Not on your lists

19969..21051
DNA (1083bp) protein (361aa)
Peptide chain release factor 1 n=1 Tax=uncultured bacterium RepID=K2EK13_9BACT
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
prfA; peptide chain release factor 1; K02835 peptide chain release factor 1
SCNpilot_cont_1000_p_scaffold_204_curated_21
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21326..21715
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2EHC1_9BACT
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_204_curated_22
Frischella perrara, Frischella, Orbales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21809..24730
DNA (2922bp) protein (974aa)
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI0003609C69
TPR repeat, SEL1 subfamily protein {ECO:0000313|EMBL:AJA44929.1}; TaxID=1267021 species="Bacteria; Proteobacteria; Gammaproteobacteria; Orbales; Orbaceae; Frischella.;" source="Frischella perrara.;"
Sel1 domain-containing protein; K07126
SCNpilot_cont_1000_p_scaffold_204_curated_23
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24909..26183
DNA (1275bp) protein (425aa)
ATPase; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
tRNA(Ile)-lysidine synthase id=2719326 bin=GWC2_Alphaproteobacteria_42_16 species=Wolbachia sp. genus=Wolbachia taxon_order=Rickettsiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_204_curated_24

Not on your lists

26220..28163
DNA (1944bp) protein (648aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ATP-dependent zinc metalloprotease FtsH id=2719320 bin=GWC2_Alphaproteobacteria_42_16 species=unknown genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
ftsH1; cell division protein FtsH; ATP-dependent metalloprotease
SCNpilot_cont_1000_p_scaffold_204_curated_25
unknown

Not on your lists

28312..29601
DNA (1290bp) protein (430aa)
hypothetical protein n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225B75B
SCNpilot_cont_1000_p_scaffold_204_curated_26
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

29728..30780
DNA (1053bp) protein (351aa)
Zinc-containing alcohol dehydrogenase superfamily protein n=1 Tax=Leptospirillum sp. Group II '5-way CG' RepID=B6AQC9_9BACT
Zn-dependent alcohol dehydrogenase
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
SCNpilot_cont_1000_p_scaffold_204_curated_27
Neisseria mucosa, Neisseria, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31148..32722
DNA (1575bp) protein (525aa)
Putative uncharacterized protein n=1 Tax=Neisseria mucosa C102 RepID=E5UL25_NEIMU
Uncharacterized protein {ECO:0000313|EMBL:EFV80606.1}; TaxID=435832 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria.;" source="Neisseria mucosa C102.;"
hypothetical protein; K07126
SCNpilot_cont_1000_p_scaffold_204_curated_28
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33067..34974
DNA (1908bp) protein (636aa)
Ribonucleoside-diphosphate reductase {ECO:0000256|RuleBase:RU003410}; EC=1.17.4.1 {ECO:0000256|RuleBase:RU003410};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
ribonucleotide-diphosphate reductase subunit alpha (EC:1.17.4.1); K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
Ribonucleoside-diphosphate reductase n=2 Tax=Rhodospirillum rubrum RepID=G2T707_RHORU
SCNpilot_cont_1000_p_scaffold_204_curated_29
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34993..36072
DNA (1080bp) protein (360aa)
Ribonucleoside-diphosphate reductase subunit beta {ECO:0000256|PIRNR:PIRNR000355}; EC=1.17.4.1 {ECO:0000256|PIRNR:PIRNR000355};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
nrdF; ribonucleotide-diphosphate reductase subunit beta (EC:1.17.4.1); K00526 ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
ribonucleotide-diphosphate reductase subunit beta n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225A996
SCNpilot_cont_1000_p_scaffold_204_curated_30
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36185..37222
DNA (1038bp) protein (346aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2FE03_9BACT
mreB; rod shape-determining protein MreB and-like proteins; K03569 rod shape-determining protein MreB and related proteins
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
Displaying items 1-30 of 107 in total

View Taxonomy