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SCNpilot_expt_1000_bf_scaffold_717_curated

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_717_curated_1
BJP_IG2069_Desfulfarculales_53_13, Desulfarculales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(69..4298)
DNA (4230bp) protein (1410aa)
hypothetical protein n=1 Tax=Kiloniella laminariae RepID=UPI000373137B
hypothetical protein; K09800 hypothetical protein
Tax=BJP_IG2069_Desfulfarculales_53_13
SCNpilot_expt_1000_bf_scaffold_717_curated_2
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4310..6196)
DNA (1887bp) protein (629aa)
Surface antigen n=1 Tax=Oceanibaculum indicum P24 RepID=K2JS55_9PROT
Membrane protein {ECO:0000313|EMBL:KJR66832.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
putative outer membrane protein; K07278 outer membrane protein
SCNpilot_expt_1000_bf_scaffold_717_curated_3
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6269..7225)
DNA (957bp) protein (319aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1ZY57_9BACT
family 2 glycosyl transferase
Tax=RBG_16_Gamma2_65_34_curated
SCNpilot_expt_1000_bf_scaffold_717_curated_4
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7229..8416)
DNA (1188bp) protein (396aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2AW15_9BACT
DegT/DnrJ/EryC1/StrS aminotransferase
Tax=RBG_16_Gamma2_60_9_curated
SCNpilot_expt_1000_bf_scaffold_717_curated_5
CG_Delta_06, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8400..8765)
DNA (366bp) protein (122aa)
Small multidrug resistance transmembrane protein n=1 Tax=uncultured bacterium RepID=K1Z881_9BACT
hypothetical protein
Tax=CG_Delta_06
SCNpilot_expt_1000_bf_scaffold_717_curated_6
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8762..10465)
DNA (1704bp) protein (568aa)
Dolichyl-phosphate-mannose-protein mannosyltransferase family protein id=1842096 bin=GWD2_Deltaproteobacteria_55_8 species=Rickettsiella grylli genus=Rickettsiella taxon_order=Legionellales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
glycosyl transferase family protein
Tax=RBG_16_Gamma2_65_34_curated
SCNpilot_expt_1000_bf_scaffold_717_curated_7
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10475..11593)
DNA (1119bp) protein (373aa)
putative exopolyphosphatase; K01524 exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
Ppx/GppA phosphatase n=1 Tax=Serratia sp. M24T3 RepID=I0QTC6_9ENTR
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
SCNpilot_expt_1000_bf_scaffold_717_curated_8
Phaeospirillum fulvum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


11753..13039
DNA (1287bp) protein (429aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01570, ECO:0000256|SAAS:SAAS00010700}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01570, ECO:0000256|SAAS:SAAS00089874};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01570}; TaxID=1316936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum fulvum MGU-K5.;"
Proline--tRNA ligase n=1 Tax=Phaeospirillum fulvum MGU-K5 RepID=S9SA14_PHAFV
proS; prolyl-tRNA synthetase
SCNpilot_expt_1000_bf_scaffold_717_curated_9
Thalassospira permensis, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13039..14283
DNA (1245bp) protein (415aa)
Lipoprotein-releasing system permease n=1 Tax=Thalassospira xiamenensis M-5 = DSM 17429 RepID=K2LX25_9PROT
LolC/E family lipoprotein releasing system, transmembrane protein {ECO:0000313|EMBL:KEO53638.1}; TaxID=1353532 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira permensis NBRC 106175.;"
lolC; lipoprotein releasing system transmembrane protein LolC; K09808 lipoprotein-releasing system permease protein
SCNpilot_expt_1000_bf_scaffold_717_curated_10
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14287..14949
DNA (663bp) protein (221aa)
Lipoprotein-releasing system ATP-binding protein LolD {ECO:0000256|HAMAP-Rule:MF_01708}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01708};; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
lipoprotein releasing system ATP-binding protein lolD; K09810 lipoprotein-releasing system ATP-binding protein [EC:3.6.3.-]
Putative lipoprotein releasing system, ATP-binding protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QNN2_BREDI
SCNpilot_expt_1000_bf_scaffold_717_curated_11
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15009..18407
DNA (3399bp) protein (1133aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
dnaE1; DNA polymerase III subunit alpha; K02337 DNA polymerase III subunit alpha [EC:2.7.7.7]
DNA polymerase III subunit alpha n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225ABD6
SCNpilot_expt_1000_bf_scaffold_717_curated_12
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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18569..19396
DNA (828bp) protein (276aa)
30S ribosomal protein S2 n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z647_AZOL4
rpsB; 30S ribosomal protein S2; K02967 small subunit ribosomal protein S2
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
SCNpilot_expt_1000_bf_scaffold_717_curated_13
Candidatus Odyssella thessalonicensis, Candidatus Odyssella, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19414..20334
DNA (921bp) protein (307aa)
Elongation factor Ts (Fragment) n=1 Tax=Candidatus Odyssella thessalonicensis RepID=D9I3B4_9RICK
Elongation factor Ts {ECO:0000256|RuleBase:RU000642}; Flags: Fragment;; TaxID=84647 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Candidatus Odyssella.;" source="Candidatus Odyssella thessalonicensis.;"
tsf; Elongation factor Ts (EF-Ts); K02357 elongation factor Ts
SCNpilot_expt_1000_bf_scaffold_717_curated_14
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20352..21077
DNA (726bp) protein (242aa)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
pyrH; uridylate kinase (EC:2.7.4.-); K09903 uridylate kinase [EC:2.7.4.22]
Uridylate kinase n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6ISU9_RHOCS
SCNpilot_expt_1000_bf_scaffold_717_curated_15
Elstera litoralis, Elstera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21089..21646
DNA (558bp) protein (186aa)
Ribosome recycling factor (Fragment) n=1 Tax=Candidatus Odyssella thessalonicensis RepID=D9I3A3_9RICK
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=552518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Elstera.;" source="Elstera litoralis.;"
frr; ribosome recycling factor
SCNpilot_expt_1000_bf_scaffold_717_curated_16
R_Deltaproteobacteria_42_39, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21658..22455
DNA (798bp) protein (266aa)
uppS; undecaprenyl pyrophosphate synthetase (EC:2.5.1.31); K00806 undecaprenyl diphosphate synthase [EC:2.5.1.31]
Isoprenyl transferase n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K329_DESAC
Tax=RIFCSPLOWO2_02_FULL_Deltaproteobacteria_42_39_curated
SCNpilot_expt_1000_bf_scaffold_717_curated_17
GWF2_Alphaproteobacteria_58_20_curated, Alphaproteobacteria, Proteobacteria, Bacteria

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22439..23074
DNA (636bp) protein (212aa)
cdsA; phosphatidate cytidylyltransferase (EC:2.7.7.41); K00981 phosphatidate cytidylyltransferase [EC:2.7.7.41]
hypothetical protein n=1 Tax=Kiloniella laminariae RepID=UPI000361BE0E
Tax=GWF2_Alphaproteobacteria_58_20_curated
SCNpilot_expt_1000_bf_scaffold_717_curated_18
BJP_IG2103_ACD39_50_23, ACD39, Bacteria

Not on your lists

23077..24237
DNA (1161bp) protein (387aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267); K00099 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
hypothetical protein n=1 Tax=Kiloniella laminariae RepID=UPI0003744173
Tax=BJP_IG2103_ACD39_50_23
SCNpilot_expt_1000_bf_scaffold_717_curated_19
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24264..25400
DNA (1137bp) protein (379aa)
Zinc metalloprotease {ECO:0000256|RuleBase:RU362031}; EC=3.4.24.- {ECO:0000256|RuleBase:RU362031};; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
Zinc metalloprotease n=1 Tax=Oceanibaculum indicum P24 RepID=K2IXU8_9PROT
zinc metalloprotease
SCNpilot_expt_1000_bf_scaffold_717_curated_20
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25376..27694
DNA (2319bp) protein (773aa)
Outer membrane protein assembly factor BamA n=1 Tax=Oceanibaculum indicum P24 RepID=K2KDA8_9PROT
Outer membrane protein assembly factor BamA {ECO:0000256|HAMAP-Rule:MF_01430, ECO:0000256|SAAS:SAAS00011174}; Flags: Precursor;; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
outer membrane protein
SCNpilot_expt_1000_bf_scaffold_717_curated_21
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27709..28341
DNA (633bp) protein (211aa)
Uncharacterized protein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AKY6_AZOBR
Uncharacterized protein {ECO:0000313|EMBL:AIL13406.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
exported protein of unknown function; putative OmpH domain
SCNpilot_expt_1000_bf_scaffold_717_curated_22
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28334..29374
DNA (1041bp) protein (347aa)
UDP-3-O-acylglucosamine N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_00523}; EC=2.3.1.- {ECO:0000256|HAMAP-Rule:MF_00523};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; K02536 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
UDP-3-O-acylglucosamine N-acyltransferase n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=LPXD_MAGSA
SCNpilot_expt_1000_bf_scaffold_717_curated_23
Candidatus Paracaedibacter acanthamoebae, Candidatus Paracaedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29371..29829
DNA (459bp) protein (153aa)
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ {ECO:0000256|HAMAP-Rule:MF_00406, ECO:0000256|SAAS:SAAS00064869}; EC=4.2.1.59 {ECO:0000256|HAMAP-Rule:MF_00406, ECO:0000256|SAAS:SAAS00064862};; (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase {ECO:0000256|HAMAP-Rule:MF_00406}; Beta-hydroxyacyl-ACP dehydratase {ECO:0000256|HAMAP-Rule:MF_00406}; TaxID=91604 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Candidatus Paracaedibacter.;" source="Candidatus Paracaedibacter acant
3-hydroxyacyl-ACP dehydratase n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225ABA7
fabZ; (3R)-hydroxymyristol acyl carrier protein dehydratase
SCNpilot_expt_1000_bf_scaffold_717_curated_24
Candidatus Paracaedibacter acanthamoebae, Candidatus Paracaedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29839..30627
DNA (789bp) protein (263aa)
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase {ECO:0000256|HAMAP-Rule:MF_00387, ECO:0000256|SAAS:SAAS00064156}; Short=UDP-N-acetylglucosamine acyltransferase {ECO:0000256|HAMAP-Rule:MF_00387};; EC=2.3.1.129 {ECO:0000256|HAMAP-Rule:MF_00387, ECO:0000256|SAAS:SAAS00001267};; TaxID=91604 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Candidatus Paracaedibacter.;" source="Candidatus Paracaedibacter acanthamoebae.;"
UDP-N-acetylglucosamine acyltransferase (EC:2.3.1.129); K00677 UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase n=2 Tax=Magnetospirillum gryphiswaldense RepID=A4TWV1_9PROT
SCNpilot_expt_1000_bf_scaffold_717_curated_25
Magnetospira sp. QH-2, Magnetospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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30673..31527
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Magnetospirillum sp. SO-1 RepID=M3ADG1_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCQ73975.1}; TaxID=1288970 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospira.;" source="Magnetospira sp. QH-2.;"
hypothetical protein; K09949 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_717_curated_26
RLO_Rhodospirillales_58_28, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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31520..32701
DNA (1182bp) protein (394aa)
lpxB; lipid-A-disaccharide synthase (EC:2.4.1.182); K00748 lipid-A-disaccharide synthase [EC:2.4.1.182]
lipid-A-disaccharide synthase n=1 Tax=Thalassospira lucentensis RepID=UPI0003B393C2
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_58_28_curated
SCNpilot_expt_1000_bf_scaffold_717_curated_27
unknown

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32785..33570
DNA (786bp) protein (262aa)

This feature has no annotations

Displaying 27 items

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