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SCNpilot_expt_1000_bf_scaffold_433_curated

Search features with annotation key words

Displaying items 1-30 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_433_curated_1
unknown

Not on your lists

2..748
DNA (747bp) protein (249aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_433_curated_2

Not on your lists

1347..2297
DNA (951bp) protein (317aa)
Putative LysR substrate binding domain protein n=1 Tax=uncultured marine microorganism HF4000_141I21 RepID=B3T2L0_9ZZZZ
Putative LysR substrate binding domain protein {ECO:0000313|EMBL:ABZ06819.1}; TaxID=455526 species="unclassified sequences; environmental samples.;" source="uncultured marine microorganism HF4000_141I21.;"
regulatory helix-turn-helix protein, lysR family,ligand-binding protein, LysR family
SCNpilot_expt_1000_bf_scaffold_433_curated_3
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2850..4649)
DNA (1800bp) protein (600aa)
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI000364545F
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
mutL; DNA mismatch repair protein mutL; K03572 DNA mismatch repair protein MutL
SCNpilot_expt_1000_bf_scaffold_433_curated_4
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4615..5862)
DNA (1248bp) protein (416aa)
phosphoglucose isomerase; K01810 glucose-6-phosphate isomerase [EC:5.3.1.9]
phosphoglucose isomerase (PGI) n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225BC49
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_expt_1000_bf_scaffold_433_curated_5
Roseovarius nubinhibens, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5868..7211)
DNA (1344bp) protein (448aa)
Peptidase, M16 family protein n=1 Tax=Roseovarius nubinhibens ISM RepID=A3SKN5_9RHOB
Peptidase, M16 family protein {ECO:0000313|EMBL:EAP77916.1}; TaxID=89187 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius nubinhibens ISM.;"
peptidase M16 domain-containing protein
SCNpilot_expt_1000_bf_scaffold_433_curated_6
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7208..8635)
DNA (1428bp) protein (476aa)
zinc protease n=1 Tax=Bradyrhizobium japonicum RepID=UPI000373581B
Putative Zn-dependent peptidase {ECO:0000313|EMBL:EJN11691.1}; Flags: Precursor;; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
peptidase M16 domain-containing protein
SCNpilot_expt_1000_bf_scaffold_433_curated_7
Magnetospira sp. QH-2, Magnetospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8659..9159)
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Magnetospirillum sp. SO-1 RepID=M2ZS93_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCQ72294.1}; TaxID=1288970 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospira.;" source="Magnetospira sp. QH-2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_433_curated_8
Photobacterium phosphoreum, Photobacterium, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9152..9649)
DNA (498bp) protein (166aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=659 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium.;" source="Photobacterium phosphoreum.;"
lipoprotein signal peptidase (EC:3.4.23.36); K03101 signal peptidase II [EC:3.4.23.36]
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0003616CF4
SCNpilot_expt_1000_bf_scaffold_433_curated_9
Rhodospirillaceae bacterium BRH_c57, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9646..12444)
DNA (2799bp) protein (933aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02002}; TaxID=1629718 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae.;" source="Rhodospirillaceae bacterium BRH_c57.;"
isoleucyl-tRNA synthetase (EC:6.1.1.5); K01870 isoleucyl-tRNA synthetase [EC:6.1.1.5]
isoleucyl-tRNA synthase n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225C09F
SCNpilot_expt_1000_bf_scaffold_433_curated_10
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12736..13485)
DNA (750bp) protein (250aa)
Flagellar L-ring protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3NVP5_AZOS1
flgH; flagellar L-ring protein; K02393 flagellar L-ring protein precursor FlgH
Flagellar L-ring protein {ECO:0000256|HAMAP-Rule:MF_00415}; Basal body L-ring protein {ECO:0000256|HAMAP-Rule:MF_00415}; Flags: Precursor;; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
SCNpilot_expt_1000_bf_scaffold_433_curated_11
RIFOXYD12_FULL_Rhodospirillales_60_8_curated, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13487..14419)
DNA (933bp) protein (311aa)
Flagellar basal-body P-ring formation protein FlgA n=1 Tax=Caenispirillum salinarum AK4 RepID=K9H7Y5_9PROT
flgA; flagellar basal body P-ring biosynthesis protein FlgA; K02386 flagella basal body P-ring formation protein FlgA
Tax=RIFOXYD12_FULL_Rhodospirillales_60_8_curated
SCNpilot_expt_1000_bf_scaffold_433_curated_12
Phaeospirillum fulvum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14426..15214)
DNA (789bp) protein (263aa)
flagellar basal body rod protein FlgG n=1 Tax=Maricaulis sp. JL2009 RepID=UPI0003A94EF7
Flagellar basal body rod protein FlgG {ECO:0000313|EMBL:EPY02098.1}; TaxID=1316936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum fulvum MGU-K5.;"
flgG; flagellar basal body rod protein FlgG
SCNpilot_expt_1000_bf_scaffold_433_curated_13
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15240..15956)
DNA (717bp) protein (239aa)
Flagellar basal-body rod protein FlgF n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IT33_RHOCS
flgF; flagellar basal-body rod protein FlgF; K02391 flagellar basal-body rod protein FlgF
Flagellar basal-body rod protein FlgF {ECO:0000313|EMBL:ACI98791.1}; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
SCNpilot_expt_1000_bf_scaffold_433_curated_14
RLO_Rhodospirillales_58_28, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16154..16750
DNA (597bp) protein (199aa)
Flagellar basal body-associated protein FliL n=1 Tax=Micavibrio aeruginosavorus EPB RepID=M4VK46_9PROT
Flagellar basal body-associated protein FliL
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_58_28_curated
SCNpilot_expt_1000_bf_scaffold_433_curated_15
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16764..17699
DNA (936bp) protein (312aa)
Flagellar motor switch protein FliM n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F8F7_9PROT
fliM; flagellar motor switch protein; K02416 flagellar motor switch protein FliM
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
SCNpilot_expt_1000_bf_scaffold_433_curated_16
CG_Alphaprot_01, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17696..18202
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F6D1_9PROT
hypothetical protein
Tax=CG_Alphaprot_01
SCNpilot_expt_1000_bf_scaffold_433_curated_17
R_Rhodospirillales_65_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18288..19061
DNA (774bp) protein (258aa)
hypothetical protein n=1 Tax=Kiloniella laminariae RepID=UPI00036C5358
flaA; flagellin protein FlaA
Tax=RIFCSPLOWO2_01_FULL_Rhodospirillales_65_14_curated
SCNpilot_expt_1000_bf_scaffold_433_curated_18
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19058..22099
DNA (3042bp) protein (1014aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HW93_PARL1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS64176.1}; Flags: Precursor;; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_433_curated_19
Candidatus Paracaedibacter acanthamoebae, Candidatus Paracaedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22100..22648
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3NR23_AZOS1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIK96156.1}; TaxID=91604 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Candidatus Paracaedibacter.;" source="Candidatus Paracaedibacter acanthamoebae.;"
SCNpilot_expt_1000_bf_scaffold_433_curated_20
R_Alphaproteobacteria_41_14, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22570..23367)
DNA (798bp) protein (266aa)
hypothetical protein n=1 Tax=alpha proteobacterium SCGC AAA298-K06 RepID=UPI00037CBCEF
ubiG; 3-demethylubiquinone-9 3-methyltransferase
Tax=RIFCSPHIGHO2_01_FULL_Alphaproteobacteria_41_14_curated
SCNpilot_expt_1000_bf_scaffold_433_curated_21
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23343..24926)
DNA (1584bp) protein (528aa)
Hypothetical cytosolic protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8U318_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KGM33090.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_433_curated_22
Acetobacter aceti, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24917..25627)
DNA (711bp) protein (237aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=887700 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter; Acetobacter subgen. Acetobacter.;" source="Acetobacter aceti NBRC 14818.;"
ribulose-phosphate 3-epimerase; K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1]
ribulose-phosphate 3-epimerase n=1 Tax=Acetobacter aceti RepID=UPI0003732A58
SCNpilot_expt_1000_bf_scaffold_433_curated_23
unknown

Not on your lists

25703..25864
DNA (162bp) protein (54aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_433_curated_24
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25867..26445
DNA (579bp) protein (193aa)
Cytochrome c biogenesis ATP-binding export protein CcmA {ECO:0000256|HAMAP-Rule:MF_01707}; EC=3.6.3.41 {ECO:0000256|HAMAP-Rule:MF_01707};; Heme exporter protein A {ECO:0000256|HAMAP-Rule:MF_01707}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
heme exporter protein CcmA (EC:3.6.3.41); K02193 heme exporter protein A [EC:3.6.3.41]
hypothetical protein n=1 Tax=Methylomonas sp. MK1 RepID=UPI000382C53F
SCNpilot_expt_1000_bf_scaffold_433_curated_25
Magnetospirillum magneticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26442..27080
DNA (639bp) protein (213aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003789F74
ABC-type transport system involved in cytochrome c biogenesis, permease component; K02194 heme exporter protein B
Heme exporter protein B {ECO:0000256|PIRNR:PIRNR002764}; TaxID=342108 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magneticum (strain AMB-1 / ATCC 700264).;"
SCNpilot_expt_1000_bf_scaffold_433_curated_26
Magnetospirillum magnetotacticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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27089..27805
DNA (717bp) protein (239aa)
ABC-type transport system involved in cytochrome c biogenesis, permease component n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2VZH4_MAGSA
Cytochrome c-type biogenesis protein CcmC putative heme lyase for CcmE {ECO:0000313|EMBL:KIL98162.1}; TaxID=272627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magnetotacticum MS-1.;"
ABC-type transport system involved in cytochrome c biogenesis, permease component; K02195 heme exporter protein C
SCNpilot_expt_1000_bf_scaffold_433_curated_27
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27897..28229
DNA (333bp) protein (111aa)
4Fe-4S ferredoxin iron-sulfur binding domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HTT1_PARL1
4Fe-4S ferredoxin; K05524 ferredoxin
4Fe-4S ferredoxin iron-sulfur binding domain protein {ECO:0000313|EMBL:ABS63314.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_433_curated_28
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28380..28877
DNA (498bp) protein (166aa)
Transcriptional regulator n=1 Tax=Oceanibaculum indicum P24 RepID=K2K260_9PROT
Transcriptional regulator {ECO:0000313|EMBL:EKE76954.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
transcriptional regulator; K07736 CarD family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_433_curated_29
GWB2_Nitrospirae_47_37_curated, Nitrospirae, Bacteria

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comp(28888..31044)
DNA (2157bp) protein (719aa)
Putative uncharacterized protein id=2027213 bin=GWB2_Nitrospirae_rel_47_37 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
hypothetical protein
Tax=GWB2_Nitrospirae_47_37_curated
SCNpilot_expt_1000_bf_scaffold_433_curated_30
Legionella pneumophila, Legionella, Legionellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31251..32870
DNA (1620bp) protein (540aa)
hypothetical protein; K00311 electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1] rbh
Uncharacterized protein n=1 Tax=Legionella pneumophila (strain Lens) RepID=Q5WX59_LEGPL
Uncharacterized protein {ECO:0000313|EMBL:CAH15478.1}; TaxID=297245 species="Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella.;" source="Legionella pneumophila (strain Lens).;"
Displaying items 1-30 of 55 in total

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