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SCNpilot_cont_300_bf_scaffold_5169_curated

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_5169_curated_1
Hyphomonas beringensis, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..261
DNA (261bp) protein (87aa)
Imidazole glycerol phosphate synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; EC=4.1.3.- {ECO:0000256|HAMAP-Rule:MF_01013};; IGP synthase cyclase subunit {ECO:0000256|HAMAP-Rule:MF_01013}; IGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; ImGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; TaxID=1280946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas beringensis.;"
imidazole glycerol phosphate synthase subunit HisF; K02500 cyclase [EC:4.1.3.-]
imidazole glycerol phosphate synthase n=1 Tax=Methylobacterium sp. 77 RepID=UPI000378DA99
SCNpilot_cont_300_bf_scaffold_5169_curated_2
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

258..1214
DNA (957bp) protein (319aa)
Adenylate cyclase n=1 Tax=Caenispirillum salinarum AK4 RepID=K9GZ42_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EWY38466.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
adenylate cyclase
SCNpilot_cont_300_bf_scaffold_5169_curated_3
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1168..1788)
DNA (621bp) protein (207aa)
putative phosphoglycerate mutase; K15634 probable phosphoglycerate mutase [EC:5.4.2.1]
Putative phosphoglycerate mutase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z7M3_AZOL4
Phosphoglycerate mutase {ECO:0000313|EMBL:KJR66237.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
SCNpilot_cont_300_bf_scaffold_5169_curated_4
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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1812..2336
DNA (525bp) protein (175aa)
Thioesterase superfamily protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HSM9_PARL1
Uncharacterized protein {ECO:0000313|EMBL:CDO59746.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
thioesterase superfamily protein
SCNpilot_cont_300_bf_scaffold_5169_curated_5
unknown

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comp(2258..2410)
DNA (153bp) protein (51aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_5169_curated_6
Hyphomonas adhaerens, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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2837..3361
DNA (525bp) protein (175aa)
Malate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01517, ECO:0000256|SAAS:SAAS00060476}; EC=1.1.1.37 {ECO:0000256|HAMAP-Rule:MF_01517, ECO:0000256|SAAS:SAAS00060476};; TaxID=1280949 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas adhaerens MHS-3.;"
Malate dehydrogenase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WDC6_9GAMM
malate dehydrogenase
SCNpilot_cont_300_bf_scaffold_5169_curated_7
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3419..4213)
DNA (795bp) protein (265aa)
exodeoxyribonuclease III Xth; K01142 exodeoxyribonuclease III [EC:3.1.11.2]
Exodeoxyribonuclease III Xth n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HSN1_PARL1
Exodeoxyribonuclease III Xth {ECO:0000313|EMBL:ABS62914.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_300_bf_scaffold_5169_curated_8
unknown

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4463..4588
DNA (126bp) protein (42aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_5169_curated_9
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4603..5718)
DNA (1116bp) protein (372aa)
putative DNA-binding/iron metalloprotein/AP endonuclease; K01409 O-sialoglycoprotein endopeptidase [EC:3.4.24.57]
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000255|HAMAP-Rule:MF_01445}; EC=2.3.1.234 {ECO:0000255|HAMAP-Rule:MF_01445};; N6-L-threonylcarbamoyladenine synthase {ECO:0000255|HAMAP-Rule:MF_01445}; Short=t(6)A synthase {ECO:0000255|HAMAP-Rule:MF_01445};; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000255|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000255|HAMAP-Rule:MF_01445}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteoba
tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=TSAD_OCHA4 rbh
SCNpilot_cont_300_bf_scaffold_5169_curated_10
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5789..6649
DNA (861bp) protein (287aa)
Porphobilinogen deaminase {ECO:0000256|HAMAP-Rule:MF_00260}; Short=PBG {ECO:0000256|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000256|HAMAP-Rule:MF_00260};; Hydroxymethylbilane synthase {ECO:0000256|HAMAP-Rule:MF_00260}; Pre-uroporphyrinogen synthase {ECO:0000256|HAMAP-Rule:MF_00260}; TaxID=1337887 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium 229E.;"
hemC; porphobilinogen deaminase; K01749 hydroxymethylbilane synthase [EC:2.5.1.61]
Porphobilinogen deaminase n=1 Tax=Ochrobactrum intermedium M86 RepID=M5K2T9_9RHIZ
SCNpilot_cont_300_bf_scaffold_5169_curated_11
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6652..7356
DNA (705bp) protein (235aa)
uroporphyrinogen III synthase; K01719 uroporphyrinogen-III synthase [EC:4.2.1.75]
Uroporphyrinogen III synthase n=1 Tax=Azospirillum sp. (strain B510) RepID=D3NRL2_AZOS1
Uroporphyrinogen III synthase {ECO:0000313|EMBL:BAI71041.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
SCNpilot_cont_300_bf_scaffold_5169_curated_12
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(7562..9322)
DNA (1761bp) protein (587aa)
flbA n=1 Tax=Maricaulis sp. JL2009 RepID=UPI0003A7C72F
Uncharacterized protein {ECO:0000313|EMBL:KIF26118.1}; TaxID=1245923 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_5169_curated_13
alpha proteobacterium Q-1, Alphaproteobacteria, Proteobacteria, Bacteria

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9476..9901
DNA (426bp) protein (142aa)
flagellar biosynthesis repressor FlbT n=1 Tax=Maricaulis sp. JL2009 RepID=UPI0003A2F8AC
Putative flagellum biosynthesis repressor protein FlbT {ECO:0000313|EMBL:GAK34527.1}; TaxID=1492281 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium Q-1.;"
flbT; flagellar biosynthesis repressor FlbT; K06601 flagellar protein FlbT
SCNpilot_cont_300_bf_scaffold_5169_curated_14
alpha proteobacterium Q-1, Alphaproteobacteria, Proteobacteria, Bacteria

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9861..10262
DNA (402bp) protein (134aa)
Flagellar FlaF family protein n=1 Tax=Asticcacaulis excentricus (strain ATCC 15261 / DSM 4724 / VKM B-1370 / CB 48) RepID=E8RTC4_ASTEC
Protein FlaF {ECO:0000313|EMBL:GAK34526.1}; TaxID=1492281 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium Q-1.;"
flagellar flaf family protein; K06602 flagellar protein FlaF
SCNpilot_cont_300_bf_scaffold_5169_curated_15
unknown

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11115..11228
DNA (114bp) protein (38aa)
flagellin n=1 Tax=Maricaulis sp. JL2009 RepID=UPI0003AB3422
SCNpilot_cont_300_bf_scaffold_5169_curated_16
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

11520..12344
DNA (825bp) protein (275aa)
flagellin n=1 Tax=Maricaulis sp. JL2009 RepID=UPI00039DBC07
Flagellin {ECO:0000313|EMBL:KIF26036.1}; TaxID=1245923 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
flagellin domain-containing protein; K02406 flagellin
SCNpilot_cont_300_bf_scaffold_5169_curated_17
unknown

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12446..12775
DNA (330bp) protein (110aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_5169_curated_18
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12793..14028)
DNA (1236bp) protein (412aa)
DegT/DnrJ/EryC1/StrS aminotransferase n=1 Tax=Oceanibaculum indicum P24 RepID=K2J4N3_9PROT
DegT/DnrJ/EryC1/StrS aminotransferase {ECO:0000313|EMBL:EKE69857.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
DegT/DnrJ/EryC1/StrS aminotransferase
SCNpilot_cont_300_bf_scaffold_5169_curated_19
Oceanicaulis sp. HTCC2633, Oceanicaulis, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14028..15119)
DNA (1092bp) protein (364aa)
Flagellin modification protein FlmA n=1 Tax=Oceanicaulis sp. HTCC2633 RepID=A3UE12_9RHOB
Flagellin modification protein FlmA {ECO:0000313|EMBL:EAP91493.1}; TaxID=314254 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Oceanicaulis.;" source="Oceanicaulis sp. HTCC2633.;"
polysaccharide biosynthesis protein CapD
SCNpilot_cont_300_bf_scaffold_5169_curated_20
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15177..17165)
DNA (1989bp) protein (663aa)
Uncharacterized protein n=1 Tax=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) RepID=Q39YI3_GEOMG
glycoside hydrolase family protein
Uncharacterized protein {ECO:0000313|EMBL:ABB30691.1}; TaxID=269799 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
SCNpilot_cont_300_bf_scaffold_5169_curated_21
Pelobacter carbinolicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17162..18049)
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A5I9_PELCD
biotin carboxylase
Uncharacterized protein {ECO:0000313|EMBL:ABA88368.1}; TaxID=338963 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1).;"
SCNpilot_cont_300_bf_scaffold_5169_curated_22
unknown

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18456..18584
DNA (129bp) protein (43aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_5169_curated_23
GWC2_Pelobacteraceae_58_13_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(19072..20076)
DNA (1005bp) protein (335aa)
transketolase; K00615 transketolase [EC:2.2.1.1]
Transketolase central region id=4919087 bin=GWC2_Pelobacter_58_13 species=Desulfovibrio salexigens genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
Tax=GWC2_Pelobacteraceae_58_13_curated
SCNpilot_cont_300_bf_scaffold_5169_curated_24
GWC2_Pelobacteraceae_58_13_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(20069..20608)
DNA (540bp) protein (180aa)
transketolase domain-containing protein; K00615 transketolase [EC:2.2.1.1]
Transketolase domain protein id=4919088 bin=GWC2_Pelobacter_58_13 species=Desulfovibrio salexigens genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
Tax=GWC2_Pelobacteraceae_58_13_curated
SCNpilot_cont_300_bf_scaffold_5169_curated_25
unknown

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21112..22257
DNA (1146bp) protein (382aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_5169_curated_26
R_OP11_Gottesmanbacteria_42_22, Gottesmanbacteria, Microgenomates, Bacteria

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comp(22159..22989)
DNA (831bp) protein (277aa)
Putative uncharacterized protein id=4699333 bin=GWC2_CP_Nitrospirae-rel_42_7 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
Tax=RIFCSPLOWO2_01_FULL_OP11_Gottesmanbacteria_42_22_curated
SCNpilot_cont_300_bf_scaffold_5169_curated_27
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23103..24017
DNA (915bp) protein (305aa)
N-acetylneuraminate synthase (EC:2.5.1.56); K01654 N-acetylneuraminate synthase [EC:2.5.1.56]
hypothetical protein n=1 Tax=Kordiimonas gwangyangensis RepID=UPI000369FCF6
N-acetylneuraminate synthase family protein {ECO:0000313|EMBL:ABB30698.1}; TaxID=269799 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
SCNpilot_cont_300_bf_scaffold_5169_curated_28
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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24014..25855
DNA (1842bp) protein (614aa)
Acylneuraminate cytidylyltransferase id=4919094 bin=GWC2_Pelobacter_58_13 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
acylneuraminate cytidylyltransferase
Glycosyltransferase, SpsF domain-containing {ECO:0000313|EMBL:ABB30697.1}; TaxID=269799 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
SCNpilot_cont_300_bf_scaffold_5169_curated_29
unknown

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comp(25852..26100)
DNA (249bp) protein (83aa)

This feature has no annotations

Displaying 29 items

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