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SCNpilot_cont_300_bf_scaffold_2052_curated

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2052_curated_1
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..472)
DNA (471bp) protein (157aa)
Transcriptional regulator, TetR family n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SWT2_CAUSK
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ABZ73140.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_300_bf_scaffold_2052_curated_2
unknown

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comp(429..542)
DNA (114bp) protein (38aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2052_curated_3
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(543..2102)
DNA (1560bp) protein (520aa)
AMP-dependent synthetase and ligase n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SZR4_CAUSK
AMP-dependent synthetase and ligase
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
SCNpilot_cont_300_bf_scaffold_2052_curated_4
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2178..4562)
DNA (2385bp) protein (795aa)
TonB-denpendent receptor n=1 Tax=Sphingomonas echinoides RepID=UPI00026CCEA0
TonB-dependent receptor plug
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
SCNpilot_cont_300_bf_scaffold_2052_curated_5
unknown

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comp(5033..5248)
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2052_curated_6
Rhodomicrobium udaipurense, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5456..5872
DNA (417bp) protein (139aa)
Molecular chaperone (Small heat shock protein)-like protein n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I7J9_RHOVT
molecular chaperone (small heat shock protein)-like protein
Heat-shock protein Hsp20 {ECO:0000313|EMBL:KAI95603.1}; TaxID=858455 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium udaipurense JA643.;"
SCNpilot_cont_300_bf_scaffold_2052_curated_7
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5865..8246
DNA (2382bp) protein (794aa)
Lon protease {ECO:0000255|HAMAP-Rule:MF_01973}; EC=3.4.21.53 {ECO:0000255|HAMAP-Rule:MF_01973};; ATP-dependent protease La {ECO:0000255|HAMAP-Rule:MF_01973}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
ATP-dependent protease La (EC:3.4.21.53); K01338 ATP-dependent Lon protease [EC:3.4.21.53]
Lon protease n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=LON_METSB rbh
SCNpilot_cont_300_bf_scaffold_2052_curated_8
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8375..8818)
DNA (444bp) protein (148aa)
ATPase n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00036DFF29
activator of Hsp90 ATPase 1 family protein
Activator of Hsp90 ATPase 1 family protein {ECO:0000313|EMBL:ABR63927.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCNpilot_cont_300_bf_scaffold_2052_curated_9
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8866..9231)
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D7N3_BRAJP
Uncharacterized protein {ECO:0000313|EMBL:KJC38576.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2052_curated_10
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9228..9866)
DNA (639bp) protein (213aa)
hypothetical protein n=1 Tax=Kiloniella laminariae RepID=UPI000368BAE4
TetR family transcriptional regulator {ECO:0000313|EMBL:EZQ13333.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
regulatory protein, TetR family
SCNpilot_cont_300_bf_scaffold_2052_curated_11
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10376..10789)
DNA (414bp) protein (138aa)
tgt; queuine tRNA-ribosyltransferase (EC:2.4.2.29); K00773 queuine tRNA-ribosyltransferase [EC:2.4.2.29]
queuine tRNA-ribosyltransferase n=1 Tax=Sphingomonas wittichii RepID=UPI0003678D21
Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
Displaying 11 items

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