ggKbase home page

SCNpilot_cont_300_bf_scaffold_3555_curated

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_3555_curated_1
unknown

Not on your lists

comp(1..471)
DNA (471bp) protein (157aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_3555_curated_2
Lysobacter sp. A03, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(480..1526)
DNA (1047bp) protein (349aa)
hypothetical protein n=1 Tax=Nevskia ramosa RepID=UPI0003B2ED4E
NODE_28, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ96666.1}; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter sp. A03.;"
putative peptidase
SCNpilot_cont_300_bf_scaffold_3555_curated_3
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2723..3322
DNA (600bp) protein (200aa)
DNA/RNA helicase, superfamily II n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YPH0_9BRAD
DNA/RNA helicase, superfamily II {ECO:0000313|EMBL:EHR03109.1}; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
DEAD/DEAH box helicase
SCNpilot_cont_300_bf_scaffold_3555_curated_4
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3347..4825)
DNA (1479bp) protein (493aa)
aldehyde dehydrogenase; K00154 coniferyl-aldehyde dehydrogenase [EC:1.2.1.68]
Aldehyde dehydrogenase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HY75_PARL1
Aldehyde dehydrogenase {ECO:0000256|PIRNR:PIRNR036492}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
SCNpilot_cont_300_bf_scaffold_3555_curated_5
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4991..6043
DNA (1053bp) protein (351aa)
diguanylate cyclase n=1 Tax=Oceanicaulis alexandrii RepID=UPI0003B41377
Bll4347 protein {ECO:0000313|EMBL:CDO60940.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
diguanylate cyclase; K13590 diguanylate cyclase
SCNpilot_cont_300_bf_scaffold_3555_curated_6
unknown

Not on your lists

comp(6956..7879)
DNA (924bp) protein (308aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_3555_curated_7
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8064..8927
DNA (864bp) protein (288aa)
endothelin-converting enzyme 1 (EC:3.4.24.71); K07386 putative endopeptidase [EC:3.4.24.-]
Peptidase family M13 n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QES3_BREDI
Peptidase family M13 {ECO:0000313|EMBL:EKY26478.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
SCNpilot_cont_300_bf_scaffold_3555_curated_8
R_Alphaproteobacteria_63_12, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8931..9326)
DNA (396bp) protein (132aa)
HesB/YadR/YfhF n=1 Tax=Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC 12087) RepID=E0TEF3_PARBH
HesB/YadR/YfhF; K13628 iron-sulfur cluster assembly protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_63_12_curated
SCNpilot_cont_300_bf_scaffold_3555_curated_9
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9339..9644)
DNA (306bp) protein (102aa)
FeS assembly SUF system protein n=1 Tax=Brevundimonas sp. BAL3 RepID=B4W9C6_9CAUL
PaaD-like protein (DUF59) involved in Fe-S cluster assembly {ECO:0000313|EMBL:CDO60935.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_3555_curated_10
Nitratireductor basaltis, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10078..11328)
DNA (1251bp) protein (417aa)
Cysteine desulfurase {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216}; EC=2.8.1.7 {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216};; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
SufS subfamily cysteine desulfurase; K11717 cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
cysteine desulfurase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00031B959D
SCNpilot_cont_300_bf_scaffold_3555_curated_11
unknown

Not on your lists

11898..12185
DNA (288bp) protein (96aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_3555_curated_12
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12572..13321)
DNA (750bp) protein (250aa)
FeS assembly ATPase SufC n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HY83_PARL1
FeS assembly ATPase SufC {ECO:0000313|EMBL:GAK44609.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
FeS assembly ATPase SufC; K09013 Fe-S cluster assembly ATP-binding protein
SCNpilot_cont_300_bf_scaffold_3555_curated_13
Rhodobacterales bacterium HTCC2255, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13323..13778)
DNA (456bp) protein (152aa)
cysteine desulfarase n=1 Tax=Paracoccus zeaxanthinifaciens RepID=UPI0003B44143
FeS assembly protein SufB {ECO:0000313|EMBL:EAU52630.1}; TaxID=367336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales.;" source="Rhodobacterales bacterium HTCC2255.;"
cysteine desulfurase activator complex subunit SufB; K09014 Fe-S cluster assembly protein SufB
Displaying 13 items

View Taxonomy