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SCNpilot_cont_300_bf_scaffold_1568_curated

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1568_curated_1
Methylobacterium sp. GXF4, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

175..903
DNA (729bp) protein (243aa)
glutamine amidotransferase (EC:6.3.5.2); K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
Glutamine amidotransferase n=1 Tax=Methylobacterium sp. GXF4 RepID=I9CI56_9RHIZ
Glutamine amidotransferase {ECO:0000313|EMBL:EIZ83150.1}; TaxID=1096546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. GXF4.;"
SCNpilot_cont_300_bf_scaffold_1568_curated_2
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(882..2597)
DNA (1716bp) protein (572aa)
cytochrome C biogenesis protein n=1 Tax=Dyella japonica RepID=UPI000319A302
Cytochrome C biogenesis protein {ECO:0000313|EMBL:AIF47424.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
cytochrome c biogenesis protein
SCNpilot_cont_300_bf_scaffold_1568_curated_3
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2759..3595
DNA (837bp) protein (279aa)
Ribosomal RNA large subunit methyltransferase J {ECO:0000256|HAMAP-Rule:MF_00934}; EC=2.1.1.266 {ECO:0000256|HAMAP-Rule:MF_00934};; 23S rRNA (adenine(2030)-N6)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00934}; 23S rRNA m6A2030 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00934}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
lactate dehydrogenase n=1 Tax=Methylosinus sp. LW4 RepID=UPI000375A7B4
hypothetical protein; K07115
SCNpilot_cont_300_bf_scaffold_1568_curated_4
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4246..5907)
DNA (1662bp) protein (554aa)
Resolvase-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8D0_NOVAD
resolvase-like protein
Resolvase-like protein {ECO:0000313|EMBL:ABD25893.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_300_bf_scaffold_1568_curated_5
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5862..6278)
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8C9_NOVAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD25894.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_300_bf_scaffold_1568_curated_6
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6278..6562)
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8C8_NOVAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD25895.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_300_bf_scaffold_1568_curated_7
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6733..7521
DNA (789bp) protein (263aa)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
DNA methylase N-4/N-6 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8C7_NOVAD
DNA methylase N-4/N-6
SCNpilot_cont_300_bf_scaffold_1568_curated_8
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7514..8002
DNA (489bp) protein (163aa)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
DNA methylase N-4/N-6 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8C7_NOVAD
DNA methylase N-4/N-6
SCNpilot_cont_300_bf_scaffold_1568_curated_9
Octadecabacter arcticus, Octadecabacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7999..8571
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Octadecabacter arcticus 238 RepID=M9RFT9_9RHOB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGI71027.1}; TaxID=391616 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Octadecabacter.;" source="Octadecabacter arcticus 238.;"
SCNpilot_cont_300_bf_scaffold_1568_curated_10
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8568..9134
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WU20_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ36519.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1568_curated_11
unknown

Not on your lists

9357..9779
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B655A5
SCNpilot_cont_300_bf_scaffold_1568_curated_12
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10270..10656)
DNA (387bp) protein (129aa)
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI00036E18D1
Succinate dehydrogenase, hydrophobic membrane anchor protein {ECO:0000313|EMBL:EKE71540.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
sdhD; succinate dehydrogenase, hydrophobic membrane anchor subunit
SCNpilot_cont_300_bf_scaffold_1568_curated_13
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10661..11059)
DNA (399bp) protein (133aa)
succinate dehydrogenase subunit C (EC:1.3.5.1); K00241 succinate dehydrogenase cytochrome b556 subunit
Succinate dehydrogenase, cytochrome b subunit n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE65_9GAMM
Succinate dehydrogenase, cytochrome b subunit {ECO:0000313|EMBL:EIL97756.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
SCNpilot_cont_300_bf_scaffold_1568_curated_14
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11080..13149)
DNA (2070bp) protein (690aa)
Succinate dehydrogenase iron-sulfur subunit {ECO:0000256|RuleBase:RU361237}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU361237};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
succinate dehydrogenase and fumarate reductase iron-sulfur protein (EC:1.3.5.1); K00240 succinate dehydrogenase iron-sulfur subunit [EC:1.3.99.1]
Succinate dehydrogenase iron-sulfur subunit n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE66_9GAMM
SCNpilot_cont_300_bf_scaffold_1568_curated_15
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13579..13782)
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EI08_BRASB
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
SCNpilot_cont_300_bf_scaffold_1568_curated_16
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13779..14282)
DNA (504bp) protein (168aa)
NADH dehydrogenase, FAD-containing subunit n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YQ75_9BRAD
NADH dehydrogenase, FAD-containing subunit {ECO:0000313|EMBL:EHR04420.1}; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
sulfide-quinone reductase
SCNpilot_cont_300_bf_scaffold_1568_curated_17
unknown

Not on your lists

14487..14807
DNA (321bp) protein (107aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1568_curated_18
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15187..15564
DNA (378bp) protein (126aa)
Putative transcriptional regulatory protein, Ars family n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TRB5_9BRAD
Putative transcriptional regulatory protein, Ars family {ECO:0000313|EMBL:CCE09003.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
transcriptional regulator
SCNpilot_cont_300_bf_scaffold_1568_curated_19
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15645..16652
DNA (1008bp) protein (336aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J5PJ56_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EJW11022.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein rbh
SCNpilot_cont_300_bf_scaffold_1568_curated_20
unknown

Not on your lists

comp(16823..17488)
DNA (666bp) protein (222aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1568_curated_21
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17782..19821
DNA (2040bp) protein (680aa)
multidrug transporter AcrB n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI000345BD6F
acriflavin resistance protein
Acriflavin resistance protein {ECO:0000313|EMBL:ADU42807.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
SCNpilot_cont_300_bf_scaffold_1568_curated_22
Methyloglobulus morosus, Methyloglobulus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19950..22358)
DNA (2409bp) protein (803aa)
Cation-transporting ATPase Pma1 {ECO:0000313|EMBL:ESS71566.1}; EC=3.6.3.- {ECO:0000313|EMBL:ESS71566.1};; TaxID=1116472 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methyloglobulus.;" source="Methyloglobulus morosus KoM1.;"
P-type HAD superfamily ATPase (EC:3.6.3.8); K01537 Ca2+-transporting ATPase [EC:3.6.3.8]
Cation-transporting ATPase Pma1 n=1 Tax=Methyloglobulus morosus KoM1 RepID=V5DW42_9GAMM
SCNpilot_cont_300_bf_scaffold_1568_curated_23
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22721..25084)
DNA (2364bp) protein (788aa)
Probable phosphoketolase {ECO:0000256|HAMAP-Rule:MF_01403}; EC=4.1.2.- {ECO:0000256|HAMAP-Rule:MF_01403};; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
xfp; phosphoketolase (EC:4.1.2.22); K01632 fructose-6-phosphate phosphoketolase [EC:4.1.2.22]
phosphoketolase n=1 Tax=Bradyrhizobium elkanii RepID=UPI00037645D6
SCNpilot_cont_300_bf_scaffold_1568_curated_24
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25108..26304)
DNA (1197bp) protein (399aa)
ackA; acetate kinase; K00925 acetate kinase [EC:2.7.2.1]
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Acetate kinase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIZ3_9SPHN
SCNpilot_cont_300_bf_scaffold_1568_curated_25
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26679..27212)
DNA (534bp) protein (178aa)
Cytochrome B561 n=1 Tax=Methylotenera sp. (strain 301) RepID=D7DP76_METS0
Strain MEJ076 contig_54, whole genome shotgun sequence {ECO:0000313|EMBL:KIP97665.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
cytochrome b561; K12262 cytochrome b561
SCNpilot_cont_300_bf_scaffold_1568_curated_26
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27436..27630)
DNA (195bp) protein (65aa)
Putative manganese transport protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5ENL0_BRASB
manganese transport protein
Putative manganese transport protein {ECO:0000313|EMBL:ABQ37754.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
SCNpilot_cont_300_bf_scaffold_1568_curated_27
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27633..28640)
DNA (1008bp) protein (336aa)
Mn2+/Fe2_transporter, NRAMP family n=1 Tax=Microvirga sp. WSM3557 RepID=I4YML0_9RHIZ
Mn2+/Fe2_transporter, NRAMP family {ECO:0000313|EMBL:EIM25202.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
manganese transport protein
SCNpilot_cont_300_bf_scaffold_1568_curated_28
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28817..29854)
DNA (1038bp) protein (346aa)
Alcohol dehydrogenase GroES domain-containing protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B9P7_9RHIZ
Alcohol dehydrogenase {ECO:0000313|EMBL:KGE01616.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
alcohol dehydrogenase GroES domain-containing protein
SCNpilot_cont_300_bf_scaffold_1568_curated_29
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30053..30916
DNA (864bp) protein (288aa)
Putative universal stress protein UspA-like n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZI84_AZOL4
Universal stress protein UspA {ECO:0000313|EMBL:KJR62701.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
putative universal stress protein UspA-like
SCNpilot_cont_300_bf_scaffold_1568_curated_30
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30906..32480)
DNA (1575bp) protein (525aa)
Uncharacterized protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2JW41_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKE78787.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
hypothetical protein; K07028
Displaying items 1-30 of 38 in total

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