ggKbase home page

SCNpilot_cont_300_bf_scaffold_2076_curated

Search features with annotation key words

Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2076_curated_1
R_Alphaproteobacteria_46_13, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

307..1257
DNA (951bp) protein (317aa)
trxB; thioredoxin reductase (EC:1.8.1.9); K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9]
thioredoxin reductase n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B645B2
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_46_13_curated
SCNpilot_cont_300_bf_scaffold_2076_curated_2
Thalassospira sp. HJ, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1262..2158
DNA (897bp) protein (299aa)
LysR family transcriptional regulator n=1 Tax=Thalassospira lucentensis RepID=UPI0003B3AFA9
LysR family transcriptional regulator {ECO:0000313|EMBL:KJE35825.1}; TaxID=1616823 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira sp. HJ.;"
transcriptional regulator, LysR family protein
SCNpilot_cont_300_bf_scaffold_2076_curated_3
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2199..3197
DNA (999bp) protein (333aa)
oxidoreductase n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034A6536
alcohol dehydrogenase; K07119
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_2076_curated_4
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3204..3674)
DNA (471bp) protein (157aa)
Ferritin, Dps family protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VGE0_SPHWW
Ferritin, Dps family protein; K04047 starvation-inducible DNA-binding protein
Ferritin, Dps family protein {ECO:0000313|EMBL:EJU10111.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
SCNpilot_cont_300_bf_scaffold_2076_curated_5
Candidatus Accumulibacter sp. SK-11, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3760..4614
DNA (855bp) protein (285aa)
Putative zinc metallopeptidase n=1 Tax=Methyloversatilis universalis FAM5 RepID=F5RGS4_9RHOO
Putative metalloprotease {ECO:0000313|EMBL:EXI76620.1}; TaxID=1454000 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-11.;"
hypothetical protein; K07054
SCNpilot_cont_300_bf_scaffold_2076_curated_6
RBG_16_Alphaproteobacteria_64_48_curated, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4830..6875)
DNA (2046bp) protein (682aa)
Elongation factor G (EF-G) n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0SW02_9BRAD
elongation factor G
Tax=RBG_16_Alphaproteobacteria_64_48_curated
SCNpilot_cont_300_bf_scaffold_2076_curated_7
Polynucleobacter necessarius, Polynucleobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7054..7230)
DNA (177bp) protein (59aa)
Rubredoxin n=1 Tax=Polynucleobacter necessarius subsp. asymbioticus (strain DSM 18221 / CIP 109841 / QLW-P1DMWA-1) RepID=A4SYM7_POLSQ
rubredoxin-type Fe(Cys)4 protein
Rubredoxin {ECO:0000256|PIRNR:PIRNR000071}; TaxID=312153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Polynucleobacter.;" source="Polynucleobacter necessarius subsp. asymbioticus (strain DSM 18221 /; CIP 109841 / QLW-P1DMWA-1).;"
SCNpilot_cont_300_bf_scaffold_2076_curated_8
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7230..8507)
DNA (1278bp) protein (426aa)
Cytochrome P450 n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T5Z2_CAUSK
cytochrome P450
Cytochrome P450 {ECO:0000313|EMBL:ABZ72573.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_300_bf_scaffold_2076_curated_9
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8615..9022)
DNA (408bp) protein (136aa)
class I and II aminotransferase; K00812 aspartate aminotransferase [EC:2.6.1.1]
PREDICTED: bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C15D87
Aspartate aminotransferase {ECO:0000313|EMBL:GAK45861.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
Displaying 9 items

View Taxonomy