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SCNpilot_cont_300_bf_scaffold_2826_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2826_curated_1
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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117..1442
DNA (1326bp) protein (442aa)
Conjugation TrbI family protein n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=B5ZHT7_GLUDA
conjugation TrbI family protein; K03195 type IV secretion system protein VirB10
Conjugation TrbI family protein {ECO:0000313|EMBL:ACI52565.1}; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
SCNpilot_cont_300_bf_scaffold_2826_curated_2
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1454..1714
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCZ4_PELHB
Uncharacterized protein {ECO:0000313|EMBL:ETR77818.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2826_curated_3
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1687..2562)
DNA (876bp) protein (292aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00037D7E22
LysR family transcriptional regulator {ECO:0000313|EMBL:ETR77817.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
transcriptional regulator
SCNpilot_cont_300_bf_scaffold_2826_curated_4
unknown

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comp(2623..3000)
DNA (378bp) protein (126aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2826_curated_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3015..4298)
DNA (1284bp) protein (428aa)
Uncharacterized protein involved in copper resistance n=1 Tax=Rhodanobacter denitrificans RepID=M4NGR0_9GAMM
uncharacterized protein involved in copper resistance
Uncharacterized protein involved in copper resistance {ECO:0000313|EMBL:AGG88843.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_300_bf_scaffold_2826_curated_6
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4295..6019)
DNA (1725bp) protein (575aa)
Copper-resistance protein, CopA family protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VRW6_9GAMM
Copper-resistance protein, CopA family protein {ECO:0000313|EMBL:EIL89957.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
copper-resistance protein, CopA family
SCNpilot_cont_300_bf_scaffold_2826_curated_7
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6138..6713)
DNA (576bp) protein (192aa)
RNA polymerase sigma factor cnrH n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QXW3_BREDI
RNA polymerase sigma factor cnrH {ECO:0000313|EMBL:GAM97426.1}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_300_bf_scaffold_2826_curated_8
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6710..7153)
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. AP07 RepID=J2H529_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:EJL37950.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2826_curated_9
unknown

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comp(7150..7431)
DNA (282bp) protein (94aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2826_curated_10
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7581..8183
DNA (603bp) protein (201aa)
Cytochrome C n=1 Tax=Sphingobium baderi LL03 RepID=T0I1N1_9SPHN
Cytochrome C {ECO:0000313|EMBL:KEZ15191.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
cytochrome c family protein
SCNpilot_cont_300_bf_scaffold_2826_curated_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8196..8516
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NM93_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG88841.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_300_bf_scaffold_2826_curated_12
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8623..8841)
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TUP2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCE10180.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2826_curated_13
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9227..9484)
DNA (258bp) protein (86aa)
Uncharacterized protein {ECO:0000313|EMBL:CEG10682.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
Putative uncharacterized protein id=24470347 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
SCNpilot_cont_300_bf_scaffold_2826_curated_14
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9570..10973
DNA (1404bp) protein (468aa)
Cation transport ATPase id=2820200 bin=GWF1_Rhodobacteraceae_65_7 species=Sphingobium yanoikuyae genus=Sphingobium taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
heavy metal translocating P-type ATPase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
Displaying 14 items

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