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SCNpilot_cont_300_bf_scaffold_1767_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1767_curated_1
Roseobacter sp. MED193, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..358
DNA (357bp) protein (119aa)
XdhC/CoxI family protein n=1 Tax=Roseobacter sp. MED193 RepID=A3X7Z4_9RHOB
XdhC/CoxI family protein {ECO:0000313|EMBL:EAQ46059.1}; TaxID=314262 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" source="Roseobacter sp. MED193.;"
XdhC/CoxI-like protein; K07402 xanthine dehydrogenase accessory factor
SCNpilot_cont_300_bf_scaffold_1767_curated_2
Hyphomonas sp. L-53-1-40, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(428..1360)
DNA (933bp) protein (311aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CD7AC
Uncharacterized protein {ECO:0000313|EMBL:KCZ66234.1}; TaxID=1207058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas sp. L-53-1-40.;"
SCNpilot_cont_300_bf_scaffold_1767_curated_3
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1499..2227
DNA (729bp) protein (243aa)
DNA-binding response regulator n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RLL1_9RHIZ
DNA-binding response regulator {ECO:0000313|EMBL:ESR24135.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
chemotaxis protein CheY; K02483 two-component system, OmpR family, response regulator
SCNpilot_cont_300_bf_scaffold_1767_curated_4
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2227..3582
DNA (1356bp) protein (452aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
UPI0003D03E23 related cluster n=1 Tax=unknown RepID=UPI0003D03E23
ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain-containing protein
SCNpilot_cont_300_bf_scaffold_1767_curated_5
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3592..5211
DNA (1620bp) protein (540aa)
4-diphosphocytidyl-2C-methyl-D-erythritol synthase; K07141 molybdenum cofactor cytidylyltransferase [EC:2.7.7.76]
4-diphosphocytidyl-2C-methyl-D-erythritol synthase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HXC9_PARL1
4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000313|EMBL:ABS64562.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_300_bf_scaffold_1767_curated_6
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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5204..5653
DNA (450bp) protein (150aa)
nitrogen-fixing protein NifU n=1 Tax=Oceanicola sp. S124 RepID=UPI000255A442
NifU-like protein
NifU-like protein {ECO:0000313|EMBL:ABP70063.1}; TaxID=349102 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3).;"
SCNpilot_cont_300_bf_scaffold_1767_curated_7
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5618..7225)
DNA (1608bp) protein (536aa)
alpha-glucosyltransferase; K01187 alpha-glucosidase [EC:3.2.1.20]
Alpha-glucosyltransferase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RA44_PHEZH
Alpha-glucosyltransferase {ECO:0000313|EMBL:ACG79548.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_cont_300_bf_scaffold_1767_curated_8
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7225..7839)
DNA (615bp) protein (205aa)
protease subunit of ATP-dependent Clp protease; K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RA43_PHEZH
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCNpilot_cont_300_bf_scaffold_1767_curated_9
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7927..8697)
DNA (771bp) protein (257aa)
silent information regulator protein Sir2; K12410 NAD-dependent deacetylase [EC:3.5.1.-]
Silent information regulator protein Sir2 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HXC6_PARL1
Silent information regulator protein Sir2 {ECO:0000313|EMBL:ABS64559.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_300_bf_scaffold_1767_curated_10
BJP_S1_SUB10_Methylophilales_55_32, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8699..9220)
DNA (522bp) protein (174aa)
Uncharacterized protein n=3 Tax=root RepID=Q1H2B9_METFK
hypothetical protein
Tax=BJP_S1_SUB10_Methylophilales_55_32
SCNpilot_cont_300_bf_scaffold_1767_curated_11
unknown

Not on your lists

comp(9302..9517)
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1767_curated_12
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9633..10154)
DNA (522bp) protein (174aa)
Putative outer membrane protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZ40_9RHIZ
Putative outer membrane protein {ECO:0000313|EMBL:EIM29232.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1767_curated_13
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

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comp(10272..10685)
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Ilumatobacter coccineus YM16-304 RepID=M5A228_9ACTN
hypothetical protein
Tax=RBG_16_Chloroflexi_68_14_curated
Displaying 13 items

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