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SCNpilot_cont_300_bf_scaffold_2300_curated

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2300_curated_1
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..188)
DNA (186bp) protein (62aa)
Transcriptional regulator, XRE family n=1 Tax=Sinorhizobium meliloti (strain BL225C) RepID=F6BYA9_SINMB
Uncharacterized protein {ECO:0000313|EMBL:CDN53047.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
XRE family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_2300_curated_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(243..692)
DNA (450bp) protein (150aa)
molybdopterin synthase subunit MoaE; K03635 molybdopterin synthase catalytic subunit [EC:2.-.-.-]
Molybdenum cofactor biosynthesis protein E id=1324283 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_cont_300_bf_scaffold_2300_curated_3
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(689..940)
DNA (252bp) protein (84aa)
Molybdopterin converting factor, subunit 1 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HVF5_PARL1
molybdopterin converting factor subunit 1; K03636 molybdopterin synthase sulfur carrier subunit
Molybdopterin synthase sulfur carrier subunit {ECO:0000256|RuleBase:RU362014}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_300_bf_scaffold_2300_curated_4
Roseibium sp. TrichSKD4, Roseibium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(937..1572)
DNA (636bp) protein (212aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:EFO31776.1}; EC=2.7.8.5 {ECO:0000313|EMBL:EFO31776.1};; TaxID=744980 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseibium.;" source="Roseibium sp. TrichSKD4.;"
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; K00995 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Roseibium sp. TrichSKD4 RepID=E2CIG4_9RHOB
SCNpilot_cont_300_bf_scaffold_2300_curated_5
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1606..2391)
DNA (786bp) protein (262aa)
UvrABC system protein C n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HVF7_PARL1
excinuclease ABC subunit C; K03703 excinuclease ABC subunit C
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_300_bf_scaffold_2300_curated_6
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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3493..4566
DNA (1074bp) protein (358aa)
Beta-lactamase domain protein n=1 Tax=Burkholderia phytofirmans (strain DSM 17436 / PsJN) RepID=B2TEQ2_BURPP
beta-lactamase domain-containing protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_2300_curated_7
alpha proteobacterium Q-1, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4567..4959)
DNA (393bp) protein (131aa)
Dihydroneopterin aldolase family; K01633 dihydroneopterin aldolase [EC:4.1.2.25]
Dihydroneopterin aldolase family n=1 Tax=Rhodospirillum photometricum DSM 122 RepID=H6SLI8_RHOPH
Dihydroneopterin aldolase {ECO:0000313|EMBL:GAK33581.1}; TaxID=1492281 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium Q-1.;"
SCNpilot_cont_300_bf_scaffold_2300_curated_8
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4964..5725)
DNA (762bp) protein (254aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B4F8_PARDP
Short-chain dehydrogenase {ECO:0000313|EMBL:KGJ07528.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
short chain dehydrogenase
SCNpilot_cont_300_bf_scaffold_2300_curated_9
unknown

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comp(5727..6302)
DNA (576bp) protein (192aa)
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00140}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
tryptophanyl-tRNA synthetase (EC:6.1.1.2); K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2]
tryptophanyl-tRNA synthetase n=1 Tax=alpha proteobacterium L41A RepID=UPI000375A1BF
SCNpilot_cont_300_bf_scaffold_2300_curated_10
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6772..9525)
DNA (2754bp) protein (918aa)
PII uridylyl-transferase; K00990 [protein-PII] uridylyltransferase [EC:2.7.7.59]
Bifunctional uridylyltransferase/uridylyl-removing enzyme n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HZ67_PARL1
Bifunctional uridylyltransferase/uridylyl-removing enzyme {ECO:0000256|HAMAP-Rule:MF_00277, ECO:0000256|SAAS:SAAS00228994}; Short=UTase/UR {ECO:0000256|HAMAP-Rule:MF_00277};; Bifunctional [protein-PII] modification enzyme {ECO:0000256|HAMAP-Rule:MF_00277}; Bifunctional nitrogen sensor protein {ECO:0000256|HAMAP-Rule:MF_00277}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 1
SCNpilot_cont_300_bf_scaffold_2300_curated_11
Arcobacter sp. L, Arcobacter, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9592..10293)
DNA (702bp) protein (234aa)
Aquaporin Z n=1 Tax=Arcobacter sp. L RepID=G2HXP9_9PROT
aquaporin; K06188 aquaporin Z
Aquaporin Z {ECO:0000256|HAMAP-Rule:MF_01146}; TaxID=944547 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Arcobacter.;" source="Arcobacter sp. L.;"
SCNpilot_cont_300_bf_scaffold_2300_curated_12
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10438..11421
DNA (984bp) protein (328aa)
adh5; alcohol dehydrogenase (EC:1.1.1.1); K13953 alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
Alcohol dehydrogenase {ECO:0000313|EMBL:CAN95063.1}; EC=1.1.1.1 {ECO:0000313|EMBL:CAN95063.1};; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
Alcohol dehydrogenase n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FJZ5_SORC5
SCNpilot_cont_300_bf_scaffold_2300_curated_13
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11411..11794)
DNA (384bp) protein (128aa)
CutA1 divalent ion tolerance protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HWM7_PARL1
CutA1 divalent ion tolerance protein; K03926 periplasmic divalent cation tolerance protein
CutA1 divalent ion tolerance protein {ECO:0000313|EMBL:ABS64310.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_300_bf_scaffold_2300_curated_14
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11830..12036)
DNA (207bp) protein (69aa)
cold-shock protein n=1 Tax=Woodsholea maritima RepID=UPI00037601D4
hypothetical protein
Cold shock protein {ECO:0000313|EMBL:EHK74328.1}; TaxID=1107881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti CCNWSX0020.;"
SCNpilot_cont_300_bf_scaffold_2300_curated_15
unknown

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comp(12036..12182)
DNA (147bp) protein (49aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2300_curated_16
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12253..12867)
DNA (615bp) protein (205aa)
glutathione S-transferase domain-containing protein; K00799 glutathione S-transferase [EC:2.5.1.18]
Glutathione S-transferase domain n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HVH7_PARL1
Glutathione S-transferase domain {ECO:0000313|EMBL:ABS63910.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_300_bf_scaffold_2300_curated_17
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12949..13803)
DNA (855bp) protein (285aa)
Cu/Zn superoxide dismutase (EC:1.15.1.1); K04565 Cu/Zn superoxide dismutase [EC:1.15.1.1]
Cu/Zn superoxide dismutase {ECO:0000313|EMBL:CCA92322.1}; EC=1.15.1.1 {ECO:0000313|EMBL:CCA92322.1};; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI0003604C5B
SCNpilot_cont_300_bf_scaffold_2300_curated_18
unknown

Not on your lists

14908..15147
DNA (240bp) protein (80aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2300_curated_19
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15491..15826)
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI0003786842
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ29969.1}; Flags: Precursor;; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
Displaying 19 items

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