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SCNpilot_cont_300_bf_scaffold_2922_curated

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2922_curated_1
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..534)
DNA (534bp) protein (178aa)
homoserine dehydrogenase; K00003 homoserine dehydrogenase [EC:1.1.1.3]
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Homoserine dehydrogenase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HXC0_PARL1
SCNpilot_cont_300_bf_scaffold_2922_curated_2
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(531..1739)
DNA (1209bp) protein (403aa)
Aspartate aminotransferase {ECO:0000313|EMBL:CDO61304.1}; EC=2.6.1.1 {ECO:0000313|EMBL:CDO61304.1};; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
aminotransferase; K14261 alanine-synthesizing transaminase [EC:2.6.1.-]
PREDICTED: aspartate aminotransferase-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C157FE
SCNpilot_cont_300_bf_scaffold_2922_curated_3
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1823..2938)
DNA (1116bp) protein (372aa)
Adenylate cyclase {ECO:0000313|EMBL:CDO61305.1}; EC=4.6.1.1 {ECO:0000313|EMBL:CDO61305.1};; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
Putative uncharacterized protein n=1 Tax=Chlorella variabilis RepID=E1ZL43_CHLVA
uncharacterized LOC100252521
SCNpilot_cont_300_bf_scaffold_2922_curated_4
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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3113..4972
DNA (1860bp) protein (620aa)
poly(R)-hydroxyalkanoic acid synthase; K03821 polyhydroxyalkanoate synthase [EC:2.3.1.-]
Poly(R)-hydroxyalkanoic acid synthase, class I n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HXB7_PARL1
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_2922_curated_5
unknown

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comp(4959..5198)
DNA (240bp) protein (80aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2922_curated_6
Lacinutrix sp. 5H-3-7-4, Lacinutrix, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(5294..5626)
DNA (333bp) protein (111aa)
Excinuclease ABC C subunit domain protein n=1 Tax=Lacinutrix sp. (strain 5H-3-7-4) RepID=F6GH55_LACS5
excinuclease ABC C subunit domain-containing protein; K07461 putative endonuclease
Excinuclease ABC C subunit domain protein {ECO:0000313|EMBL:AEH02180.1}; TaxID=983544 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Lacinutrix.;" source="Lacinutrix sp. (strain 5H-3-7-4).;"
SCNpilot_cont_300_bf_scaffold_2922_curated_7
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5698..5844)
DNA (147bp) protein (49aa)
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|HAMAP-Rule:MF_01110, ECO:0000313|EMBL:AJR25840.1}; Short=AGPR {ECO:0000256|HAMAP-Rule:MF_01110};; EC=1.2.1.38 {ECO:0000256|HAMAP-Rule:MF_01110, ECO:0000313|EMBL:AJR25840.1};; N-acetyl-glutamate semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01110}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38); K00145 N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
N-acetyl-gamma-glutamyl-phosphate reductase n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6EV12_SPHCR
SCNpilot_cont_300_bf_scaffold_2922_curated_8
RBG_16_Chloroflexi_50_11_curated, Chloroflexi, Bacteria

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6064..6786
DNA (723bp) protein (241aa)
Tax=RBG_16_Chloroflexi_50_11_curated
SCNpilot_cont_300_bf_scaffold_2922_curated_9
Desulfovibrio sp. 6_1_46AFAA, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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6967..7473
DNA (507bp) protein (169aa)
Uncharacterized protein n=2 Tax=Desulfovibrio RepID=D9Y9X8_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EGW50839.1}; TaxID=665942 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. 6_1_46AFAA.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2922_curated_10
Scytonema tolypothrichoides, Scytonema, Nostocales, Cyanobacteria, Bacteria

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7498..8442
DNA (945bp) protein (315aa)
Uncharacterized protein n=1 Tax=Chroococcidiopsis thermalis PCC 7203 RepID=K9U3G9_9CYAN
Uncharacterized protein {ECO:0000313|EMBL:KIJ80993.1}; TaxID=1233231 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema tolypothrichoides VB-61278.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2922_curated_11
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8485..9009)
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y838_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD49361.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein; K09983 hypothetical protein
SCNpilot_cont_300_bf_scaffold_2922_curated_12
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9058..10410)
DNA (1353bp) protein (451aa)
TPR repeat-containing protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RVH0_ACCPU
TPR repeat-containing protein
Tax=CG_Rhodocyc_01
SCNpilot_cont_300_bf_scaffold_2922_curated_13
Desulfovibrio alkalitolerans, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(10513..11556)
DNA (1044bp) protein (348aa)
PEP motif putative anchor domain protein n=1 Tax=Desulfovibrio alkalitolerans DSM 16529 RepID=S7TBL3_9DELT
PEP motif putative anchor domain protein {ECO:0000313|EMBL:EPR34552.1}; TaxID=1121439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio alkalitolerans DSM 16529.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2922_curated_14
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11823..12320)
DNA (498bp) protein (166aa)
30S ribosomal protein S9 n=1 Tax=Maricaulis sp. JL2009 RepID=UPI0003A98948
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
30S ribosomal protein S9; K02996 small subunit ribosomal protein S9
SCNpilot_cont_300_bf_scaffold_2922_curated_15
unknown

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comp(12989..13639)
DNA (651bp) protein (217aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2922_curated_16
unknown

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comp(13676..13801)
DNA (126bp) protein (42aa)

This feature has no annotations

Displaying 16 items

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