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SCNpilot_cont_300_bf_scaffold_1236_curated

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1236_curated_1
unknown

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comp(3..104)
DNA (102bp) protein (34aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1236_curated_2
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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953..1657
DNA (705bp) protein (235aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6ED99_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EHJ60698.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
phytanoyl-CoA dioxygenase
SCNpilot_cont_300_bf_scaffold_1236_curated_3
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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1696..3453
DNA (1758bp) protein (586aa)
ilvB; acetolactate synthase, large subunit; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
Acetolactate synthase, large subunit n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4REM0_PHEZH
Acetolactate synthase, large subunit {ECO:0000313|EMBL:ACG78546.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_cont_300_bf_scaffold_1236_curated_4
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3456..4277
DNA (822bp) protein (274aa)
Phytanoyl-CoA dioxygenase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRE2_PARL1
phytanoyl-CoA dioxygenase
Phytanoyl-CoA dioxygenase {ECO:0000313|EMBL:ABS62475.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_300_bf_scaffold_1236_curated_5
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4293..4982)
DNA (690bp) protein (230aa)
Response regulator of potassium translocation (Two-component system with KdpD) n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AUY2_AZOBR
kdpE; response regulator of potassium translocation (two-component system with KdpD)
Response regulator of potassium translocation (Two-component system with KdpD) {ECO:0000313|EMBL:CCD01741.1}; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
SCNpilot_cont_300_bf_scaffold_1236_curated_6
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4979..7381)
DNA (2403bp) protein (801aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
Osmosensitive K+ channel signal transduction histidine kinase (Two-component system with KdpE) n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AUY1_AZOBR
kdpD; osmosensitive K+ channel signal transduction histidine kinase (two-component system with KdpE)
SCNpilot_cont_300_bf_scaffold_1236_curated_7
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7683..8264)
DNA (582bp) protein (194aa)
Potassium-transporting ATPase C chain {ECO:0000256|HAMAP-Rule:MF_00276}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00276};; ATP phosphohydrolase [potassium-transporting] C chain {ECO:0000256|HAMAP-Rule:MF_00276}; Potassium-binding and translocating subunit C {ECO:0000256|HAMAP-Rule:MF_00276}; Potassium-translocating ATPase C chain {ECO:0000256|HAMAP-Rule:MF_00276}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L
kdpC; potassium-transporting ATPase C chain, KdpC (EC:3.6.3.12); K01548 K+-transporting ATPase ATPase C chain [EC:3.6.3.12]
UPI0003D05198 related cluster n=1 Tax=unknown RepID=UPI0003D05198
SCNpilot_cont_300_bf_scaffold_1236_curated_8
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8274..10352)
DNA (2079bp) protein (693aa)
Potassium-transporting ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00285};; ATP phosphohydrolase [potassium-transporting] B chain {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-binding and translocating subunit B {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-translocating ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source
Potassium-transporting ATPase B chain n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AUX9_AZOBR
kdpB; potassium translocating ATPase, subunit B
SCNpilot_cont_300_bf_scaffold_1236_curated_9
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10400..12139)
DNA (1740bp) protein (580aa)
Potassium-transporting ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00275, ECO:0000313|EMBL:CCD01737.1};; ATP phosphohydrolase [potassium-transporting] A chain {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-binding and translocating subunit A {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-translocating ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillu
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00036BA2CB
kdpA; potassium translocating ATPase, subunit A
SCNpilot_cont_300_bf_scaffold_1236_curated_10
unknown

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comp(12148..12333)
DNA (186bp) protein (62aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1236_curated_11
Mycobacterium thermoresistibile, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12451..14982)
DNA (2532bp) protein (844aa)
Phosphoenolpyruvate synthase/pyruvate phosphate dikinase (EC:2.7.9.2)
Phosphoenolpyruvate synthase n=1 Tax=Mycobacterium thermoresistibile ATCC 19527 RepID=G7CB30_MYCTH
Phosphoenolpyruvate synthase {ECO:0000313|EMBL:EHI14812.1}; TaxID=1078020 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium thermoresistibile ATCC 19527.;"
SCNpilot_cont_300_bf_scaffold_1236_curated_12
Thauera terpenica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(14979..15986)
DNA (1008bp) protein (336aa)
Uncharacterized protein n=1 Tax=Thauera terpenica 58Eu RepID=S9ZRT7_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:EPZ16232.1}; TaxID=1348657 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera terpenica 58Eu.;"
SCNpilot_cont_300_bf_scaffold_1236_curated_13
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16017..17300)
DNA (1284bp) protein (428aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1GZT3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:ERF83002.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
cytochrome P450
SCNpilot_cont_300_bf_scaffold_1236_curated_14
Pseudomonas sp. 19-rlim, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(17355..18284)
DNA (930bp) protein (310aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI00036998F9
Putative uncharacterized protein {ECO:0000313|EMBL:AEO27369.1}; TaxID=1084570 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 19-rlim.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1236_curated_15
Hyphomonas chukchiensis, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18302..20461)
DNA (2160bp) protein (720aa)
TonB-dependent receptor n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VHK9_CAUST
Uncharacterized protein {ECO:0000313|EMBL:KCZ59687.1}; TaxID=1280947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas chukchiensis.;"
TonB-dependent receptor
SCNpilot_cont_300_bf_scaffold_1236_curated_16
Mycobacterium hassiacum, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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20791..21369
DNA (579bp) protein (193aa)
Bacterial regulatory s, tetR family protein n=1 Tax=Mycobacterium hassiacum DSM 44199 RepID=K5BEW2_9MYCO
Bacterial regulatory s, tetR family protein {ECO:0000313|EMBL:EKF22651.1}; TaxID=1122247 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium hassiacum DSM 44199.;"
transcriptional regulator
SCNpilot_cont_300_bf_scaffold_1236_curated_17
Mycobacterium thermoresistibile, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21366..22691)
DNA (1326bp) protein (442aa)
pyruvate, water dikinase; K01007 pyruvate, water dikinase [EC:2.7.9.2]
Phosphoenolpyruvate synthase n=1 Tax=Mycobacterium thermoresistibile ATCC 19527 RepID=G7CEQ0_MYCTH
Phosphoenolpyruvate synthase {ECO:0000313|EMBL:EHI13542.1}; TaxID=1078020 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium thermoresistibile ATCC 19527.;"
Displaying 17 items

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