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SCNpilot_cont_300_bf_scaffold_2978_curated

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2978_curated_1
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..1315
DNA (1314bp) protein (438aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
DNA topoisomerase I; K03168 DNA topoisomerase I [EC:5.99.1.2]
DNA topoisomerase I n=1 Tax=Xanthobacteraceae RepID=UPI00036A281A
SCNpilot_cont_300_bf_scaffold_2978_curated_2
R_Rhodospirillales_65_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1326..2462)
DNA (1137bp) protein (379aa)
Tax=RIFCSPLOWO2_01_FULL_Rhodospirillales_65_14_curated
SCNpilot_cont_300_bf_scaffold_2978_curated_3
unknown

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comp(2586..2816)
DNA (231bp) protein (77aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2978_curated_4
unknown

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comp(2838..3044)
DNA (207bp) protein (69aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2978_curated_5
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3215..3571
DNA (357bp) protein (119aa)
exoribonuclease; K12573 ribonuclease R [EC:3.1.-.-]
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
ribonuclease R n=1 Tax=Bradyrhizobium japonicum RepID=UPI000376EC3F
SCNpilot_cont_300_bf_scaffold_2978_curated_6
R_Brevundimonas_70_19, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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3937..4299
DNA (363bp) protein (121aa)
NUDIX hydrolase n=1 Tax=Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) RepID=Q15SJ8_PSEA6
NUDIX hydrolase
Tax=RIFCSPHIGHO2_01_FULL_Brevundimonas_70_19_curated
SCNpilot_cont_300_bf_scaffold_2978_curated_7
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4296..5441
DNA (1146bp) protein (382aa)
Major facilitator superfamily MFS_1 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HWZ9_PARL1
major facilitator superfamily transporter
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABS64432.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_300_bf_scaffold_2978_curated_8
R_Alphaproteobacteria_63_12, Alphaproteobacteria, Proteobacteria, Bacteria

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5504..5671
DNA (168bp) protein (56aa)
50S ribosomal protein L33 n=1 Tax=Maricaulis sp. JL2009 RepID=UPI0003A900D0
50S ribosomal protein L33
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_63_12_curated
SCNpilot_cont_300_bf_scaffold_2978_curated_9

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comp(5672..6586)
DNA (915bp) protein (305aa)
Lipase/esterase n=1 Tax=uncultured bacterium RepID=G3C5S9_9BACT
Lipase/esterase {ECO:0000313|EMBL:ADM63077.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
alpha/beta hydrolase fold protein
SCNpilot_cont_300_bf_scaffold_2978_curated_10
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6618..7523)
DNA (906bp) protein (302aa)
Beta-ketoadipate enol-lactone hydrolase {ECO:0000313|EMBL:CDO59200.1}; EC=3.1.1.24 {ECO:0000313|EMBL:CDO59200.1};; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
Lipase/esterase n=1 Tax=uncultured bacterium RepID=G3C5T0_9BACT
alpha/beta hydrolase fold protein
SCNpilot_cont_300_bf_scaffold_2978_curated_11
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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7646..9268
DNA (1623bp) protein (541aa)
Glycerol-3-phosphate dehydrogenase {ECO:0000313|EMBL:CDO59202.1}; EC=1.1.5.3 {ECO:0000313|EMBL:CDO59202.1};; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
FAD dependent oxidoreductase; K00111 glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
FAD dependent oxidoreductase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HTQ7_PARL1
SCNpilot_cont_300_bf_scaffold_2978_curated_12
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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9265..10203
DNA (939bp) protein (313aa)
hypothetical protein n=1 Tax=Hydrogenedentes bacterium JGI 0000039-J10 RepID=UPI000372885F
Diacylglycerol kinase catalytic subunit {ECO:0000313|EMBL:GAK45472.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
diacylglycerol kinase catalytic subunit; K07029
SCNpilot_cont_300_bf_scaffold_2978_curated_13
unknown

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comp(10209..10829)
DNA (621bp) protein (207aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2978_curated_14
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11124..11849
DNA (726bp) protein (242aa)
alkylglycerone-phosphate synthase; K00803 alkyldihydroxyacetonephosphate synthase [EC:2.5.1.26]
Alkylglycerone-phosphate synthase {ECO:0000313|EMBL:ABS63288.1}; EC=2.5.1.26 {ECO:0000313|EMBL:ABS63288.1};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Alkylglycerone-phosphate synthase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HTQ5_PARL1
SCNpilot_cont_300_bf_scaffold_2978_curated_15

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comp(11846..12490)
DNA (645bp) protein (215aa)
Putative uncharacterized protein n=1 Tax=uncultured organism RepID=G3CRG1_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:AEM45144.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
alpha/beta hydrolase domain-containing protein
SCNpilot_cont_300_bf_scaffold_2978_curated_16
unknown

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comp(12866..13072)
DNA (207bp) protein (69aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2978_curated_17
Aurantimonas manganoxydans, Aurantimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13132..13689)
DNA (558bp) protein (186aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030FDD16
Uncharacterized protein {ECO:0000313|EMBL:EAS49353.1}; TaxID=287752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;" source="Manganese-oxidizing bacterium (strain SI85-9A1).;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2978_curated_18
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13686..15020)
DNA (1335bp) protein (445aa)
acyl-CoA synthetase; K12508 feruloyl-CoA synthase [EC:6.2.1.34]
AMP-dependent synthetase and ligase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HTP7_PARL1
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ABS63280.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_300_bf_scaffold_2978_curated_19
unknown

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15156..15494
DNA (339bp) protein (113aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2978_curated_20
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15539..16720)
DNA (1182bp) protein (394aa)
Tax=GWF1_Rhodobacteraceae_65_7_curated
SCNpilot_cont_300_bf_scaffold_2978_curated_21
Micavibrio aeruginosavorus, Micavibrio, Alphaproteobacteria, Proteobacteria, Bacteria

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17077..17286
DNA (210bp) protein (70aa)
Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.6.1.23)
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071038}; Short=dUTPase {ECO:0000256|HAMAP-Rule:MF_00116};; EC=3.6.1.23 {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071036};; dUTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00116}; TaxID=349215 species="Bacteria; Proteobacteria; Alphaproteobacteria; Micavibrio.;" source="Micavibrio aeruginosavorus EPB.;"
Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Micavibrio aeruginosavorus EPB RepID=M4VE95_9PROT
SCNpilot_cont_300_bf_scaffold_2978_curated_22
unknown

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17293..17364
DNA (72bp) protein (24aa)

This feature has no annotations

Displaying 22 items

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