ggKbase home page

SCNpilot_expt_1000_bf_scaffold_6958_curated

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6958_curated_1
unknown

Not on your lists


comp(46..489)
DNA (444bp) protein (148aa)
30S ribosomal protein S3 n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J579_HYPSM
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
rpsC; 30S ribosomal protein S3; K02982 small subunit ribosomal protein S3
SCNpilot_expt_1000_bf_scaffold_6958_curated_2
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(783..1004)
DNA (222bp) protein (74aa)
50S ribosomal protein L22 n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9DCG4_9RHIZ
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
rplV; 50S ribosomal protein L22; K02890 large subunit ribosomal protein L22
SCNpilot_expt_1000_bf_scaffold_6958_curated_3
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(1194..1475)
DNA (282bp) protein (94aa)
30S ribosomal protein S19 n=1 Tax=Methylocystis parvus RepID=UPI0001F883CC
rpsS; 30S ribosomal protein S19
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531, ECO:0000313|EMBL:CCJ06726.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCNpilot_expt_1000_bf_scaffold_6958_curated_4
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(1487..1639)
DNA (153bp) protein (51aa)
50S ribosomal protein L2 n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000380FCB2
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
rplB; 50S ribosomal protein L2; K02886 large subunit ribosomal protein L2
SCNpilot_expt_1000_bf_scaffold_6958_curated_5
RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1733..1993
DNA (261bp) protein (87aa)
Tax=RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated
SCNpilot_expt_1000_bf_scaffold_6958_curated_6
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2315..2608)
DNA (294bp) protein (98aa)
50S ribosomal protein L23 n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000369DB30
50S ribosomal protein L25; K02892 large subunit ribosomal protein L23
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369, ECO:0000256|RuleBase:RU003935}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_6958_curated_7
unknown

Not on your lists


comp(2605..3225)
DNA (621bp) protein (207aa)
50S ribosomal protein L4 n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J584_HYPSM
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328, ECO:0000313|EMBL:CPR15621.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
rplD; 50S ribosomal protein L4; K02926 large subunit ribosomal protein L4
SCNpilot_expt_1000_bf_scaffold_6958_curated_8
unknown

Not on your lists


comp(3225..3944)
DNA (720bp) protein (240aa)
50S ribosomal protein L3 n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J585_HYPSM
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
rplC; 50S ribosomal protein L3; K02906 large subunit ribosomal protein L3
SCNpilot_expt_1000_bf_scaffold_6958_curated_9
unknown

Not on your lists


comp(4028..4336)
DNA (309bp) protein (103aa)
30S ribosomal protein S10 n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037FBE10
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508, ECO:0000313|EMBL:CPR15616.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
rpsJ; 30S ribosomal protein S10
SCNpilot_expt_1000_bf_scaffold_6958_curated_10
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4409..5617)
DNA (1209bp) protein (403aa)
Elongation factor Tu n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JV13_HYPDA
translation elongation factor Tu; K02358 elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_expt_1000_bf_scaffold_6958_curated_11
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5696..6991)
DNA (1296bp) protein (432aa)
elongation factor G n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003702C6F
translation elongation factor G; K02355 elongation factor G
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
Displaying 11 items

View Taxonomy