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SCNpilot_expt_1000_bf_scaffold_2228_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2228_curated_1
unknown

Not on your lists

comp(1..1119)
DNA (1119bp) protein (373aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2228_curated_2
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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1678..2241
DNA (564bp) protein (188aa)
Short chain dehydrogenase family protein n=1 Tax=Rhodococcus sp. JVH1 RepID=J1R4Z7_9NOCA
Short-chain dehydrogenase {ECO:0000313|EMBL:AII08039.1}; TaxID=37919 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus (Nocardia opaca).;"
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_1000_bf_scaffold_2228_curated_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

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2855..3658
DNA (804bp) protein (268aa)
Major facilitator superfamily protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2JME2_9PROT
major facilitator transporter
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
SCNpilot_expt_1000_bf_scaffold_2228_curated_4
unknown

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comp(3580..3759)
DNA (180bp) protein (60aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2228_curated_5
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3814..5787)
DNA (1974bp) protein (658aa)
Acetoacetyl-CoA synthetase {ECO:0000313|EMBL:EKF40897.1}; EC=6.2.1.16 {ECO:0000313|EMBL:EKF40897.1};; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
acetoacetyl-CoA synthase; K01907 acetoacetyl-CoA synthetase [EC:6.2.1.16]
Acetoacetyl-CoA synthetase n=1 Tax=Nitratireductor indicus C115 RepID=K2PIA8_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2228_curated_6
unknown

Not on your lists

5974..7851
DNA (1878bp) protein (626aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000361DAAB
Uncharacterized protein {ECO:0000313|EMBL:CPR17349.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
hypothetical protein; K07289 AsmA protein
SCNpilot_expt_1000_bf_scaffold_2228_curated_7
unknown

Not on your lists

comp(7903..8568)
DNA (666bp) protein (222aa)
Protein-L-isoaspartate O-methyltransferase {ECO:0000313|EMBL:CPR20394.1}; EC=2.1.1.77 {ECO:0000313|EMBL:CPR20394.1};; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
protein-L-isoaspartate(D-aspartate) O-methyltransferase; K00573 protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
Protein-L-isoaspartate O-methyltransferase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SDG1_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2228_curated_8
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8787..9662
DNA (876bp) protein (292aa)
ABC transporter permease n=1 Tax=Afipia birgiae RepID=UPI0002E57BF0
ABC transporter permease {ECO:0000313|EMBL:KJC47790.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
ABC transporter permease; K01997 branched-chain amino acid transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_2228_curated_9
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9678..10829
DNA (1152bp) protein (384aa)
ABC-type branched-chain amino acid transport system, permease component n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YD09_9BRAD
ABC transporter permease; K01998 branched-chain amino acid transport system permease protein rbh
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_2228_curated_10
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10826..11584
DNA (759bp) protein (253aa)
ABC-type branched-chain amino acid transport system, ATPase component n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3I3J2_9BRAD
ABC transporter ATP-binding protein; K01995 branched-chain amino acid transport system ATP-binding protein rbh
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_2228_curated_11
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11589..12425
DNA (837bp) protein (279aa)
ABC transporter ATP-binding protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89C68_BRADU
ABC transporter ATP-binding protein {ECO:0000313|EMBL:ETR74748.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
ABC transporter ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_2228_curated_12
unknown

Not on your lists

comp(12728..12907)
DNA (180bp) protein (60aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2228_curated_13
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13156..13533
DNA (378bp) protein (126aa)
fatty-acid--CoA ligase n=1 Tax=Bradyrhizobium elkanii RepID=UPI000361F2CD
Fatty-acid--CoA ligase {ECO:0000313|EMBL:ETR74749.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
putative fatty-acid--CoA ligase
Displaying 13 items

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