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SCNpilot_expt_1000_bf_scaffold_9658_curated

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_9658_curated_1
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

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2..208
DNA (207bp) protein (69aa)
Fumarate hydratase class II {ECO:0000256|HAMAP-Rule:MF_00743}; Short=Fumarase C {ECO:0000256|HAMAP-Rule:MF_00743};; EC=4.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00743};; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
fumC; fumarate hydratase; K01679 fumarate hydratase, class II [EC:4.2.1.2]
Fumarate hydratase class II n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IAV3_AZOC5
SCNpilot_expt_1000_bf_scaffold_9658_curated_2
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(401..1537)
DNA (1137bp) protein (379aa)
bifunctional shikimate kinase / dehydroquinate synthase (EC:2.7.1.71 4.2.3.4); K13829 shikimate kinase / 3-dehydroquinate synthase [EC:2.7.1.71 4.2.3.4]
Bifunctional shikimate kinase (N-terminal) / dehydroquinate synthase (C-terminal) enzyme {ECO:0000313|EMBL:CCB67626.1}; EC=2.7.1.71 {ECO:0000313|EMBL:CCB67626.1};; EC=4.2.3.4 {ECO:0000313|EMBL:CCB67626.1};; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
Bifunctional shikimate kinase (N-terminal) / dehydroquinate synthase (C-terminal) enzyme n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JC12_HYPSM
SCNpilot_expt_1000_bf_scaffold_9658_curated_3
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1539..2180)
DNA (642bp) protein (214aa)
3-dehydroquinate synthase; K13829 shikimate kinase / 3-dehydroquinate synthase [EC:2.7.1.71 4.2.3.4]
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037DAE2E
3-dehydroquinate synthase {ECO:0000313|EMBL:ADJ24965.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_expt_1000_bf_scaffold_9658_curated_4
unknown

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2793..3536
DNA (744bp) protein (248aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9658_curated_5
RBG_16_Alphaproteobacteria_64_48_curated, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4362..4580
DNA (219bp) protein (73aa)
Tax=RBG_16_Alphaproteobacteria_64_48_curated
SCNpilot_expt_1000_bf_scaffold_9658_curated_6
Oceanicaulis sp. HTCC2633, Oceanicaulis, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4586..5110)
DNA (525bp) protein (175aa)
hypothetical protein n=1 Tax=Woodsholea maritima RepID=UPI0003605ADA
Transcriptional regulator, MarR family protein {ECO:0000313|EMBL:EAP89427.1}; TaxID=314254 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Oceanicaulis.;" source="Oceanicaulis sp. HTCC2633.;"
MarR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_9658_curated_7
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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5242..6135
DNA (894bp) protein (298aa)
Transcriptional regulator n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P6M9_AZOS1
Transcriptional regulator {ECO:0000313|EMBL:AIB15312.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_9658_curated_8
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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6418..7155
DNA (738bp) protein (246aa)
Tax=RBG_16_Gamma2_60_9_curated
SCNpilot_expt_1000_bf_scaffold_9658_curated_9
unknown

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7253..7363
DNA (111bp) protein (37aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9658_curated_10
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8452..9408)
DNA (957bp) protein (319aa)
Proline iminopeptidase {ECO:0000256|RuleBase:RU003421}; EC=3.4.11.5 {ECO:0000256|RuleBase:RU003421};; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
proline iminopeptidase (EC:3.4.11.5); K01259 proline iminopeptidase [EC:3.4.11.5]
Proline iminopeptidase n=1 Tax=Nitratireductor indicus C115 RepID=K2NUA6_9RHIZ
SCNpilot_expt_1000_bf_scaffold_9658_curated_11
bacterium YEK0313, Bacteria

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comp(9503..10036)
DNA (534bp) protein (178aa)
NADP-dependent isocitrate dehydrogenase; K00031 isocitrate dehydrogenase [EC:1.1.1.42]
Isocitrate dehydrogenase [NADP] {ECO:0000256|PIRNR:PIRNR000108}; EC=1.1.1.42 {ECO:0000256|PIRNR:PIRNR000108};; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
isocitrate dehydrogenase n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037B6E1B
SCNpilot_expt_1000_bf_scaffold_9658_curated_12
Anguilla anguilla, Anguilla, Anguilliformes, Neopterygii, Chordata, Metazoa

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10351..10536
DNA (186bp) protein (62aa)
Uncharacterized protein {ECO:0000313|EMBL:JAH02430.1}; TaxID=7936 species="Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Anguilliformes; Anguillidae; Anguilla.;" source="Anguilla anguilla (European freshwater eel) (Muraena anguilla).;"
Displaying 12 items

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