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SCNpilot_expt_1000_bf_scaffold_2984_curated

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2984_curated_1
Cupriavidus pinatubonensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1..270
DNA (270bp) protein (90aa)
UspA n=1 Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q46RA3_CUPPJ
hypothetical protein
UspA {ECO:0000313|EMBL:AAZ64331.1}; TaxID=264198 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) (Ralstonia; eutropha (strain JMP 134)).;"
SCNpilot_expt_1000_bf_scaffold_2984_curated_2
unknown

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comp(860..1213)
DNA (354bp) protein (118aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2984_curated_3
unknown

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1984..2772
DNA (789bp) protein (263aa)
Major facilitator superfamily MFS_1 n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I522_RHOVT
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:CPR15219.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
major facilitator superfamily protein
SCNpilot_expt_1000_bf_scaffold_2984_curated_4
unknown

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2784..2981
DNA (198bp) protein (66aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2984_curated_5
unknown

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2982..4067
DNA (1086bp) protein (362aa)
LAO/AO transporter ATPase; K07588 LAO/AO transport system kinase [EC:2.7.-.-]
LAO/AO transport system ATPase n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JT46_HYPDA
Membrane ATPase/protein kinase {ECO:0000313|EMBL:CPR19946.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
SCNpilot_expt_1000_bf_scaffold_2984_curated_6
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4073..4732
DNA (660bp) protein (220aa)
Pyroglutamyl-peptidase I {ECO:0000256|SAAS:SAAS00130640}; EC=3.4.19.3 {ECO:0000256|SAAS:SAAS00130640};; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
Peptidase C15 n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SIC7_9RHIZ
peptidase C15 pyroglutamyl peptidase I
SCNpilot_expt_1000_bf_scaffold_2984_curated_7
unknown

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comp(4736..5020)
DNA (285bp) protein (95aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2984_curated_8
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5039..6556)
DNA (1518bp) protein (506aa)
amidase n=1 Tax=Cupriavidus sp. WS RepID=UPI000366FAE2
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_2984_curated_9
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6632..7603)
DNA (972bp) protein (324aa)
Twin-arginine translocation pathway signal protein n=1 Tax=uncultured bacterium RepID=C6KUK8_9BACT
MFS transporter {ECO:0000313|EMBL:ETR76788.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2984_curated_10
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7660..7812)
DNA (153bp) protein (51aa)
Membrane protein n=3 Tax=Burkholderiales RepID=D9Y6V1_9BURK
Uncharacterized protein {ECO:0000313|EMBL:ETR76791.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
conserved membrane protein of unknown function
SCNpilot_expt_1000_bf_scaffold_2984_curated_11
RBG_13_Deltaproteobacteria_51_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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8135..8326
DNA (192bp) protein (64aa)
Uncharacterized protein id=12553102 bin=BDI species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BDI organism_group=Betaproteobacteria
Tax=RBG_13_Deltaproteobacteria_51_10_curated
SCNpilot_expt_1000_bf_scaffold_2984_curated_12
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9123..9581)
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3QF02_RHOPT
Uncharacterized protein {ECO:0000313|EMBL:ETR78951.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein; K07794 putative tricarboxylic transport membrane protein
SCNpilot_expt_1000_bf_scaffold_2984_curated_13
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9781..10557)
DNA (777bp) protein (259aa)
S-(hydroxymethyl)glutathione dehydrogenase {ECO:0000256|RuleBase:RU362016}; EC=1.1.1.284 {ECO:0000256|RuleBase:RU362016};; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
alcohol dehydrogenase GroES-like protein; K00121 S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
S-(Hydroxymethyl)glutathione dehydrogenase n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RP47_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2984_curated_14
unknown

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11299..11829
DNA (531bp) protein (177aa)
Invasion associated locus B family protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JC75_HYPSM
Invasion protein {ECO:0000313|EMBL:CPR22408.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
invasion associated locus B family protein
SCNpilot_expt_1000_bf_scaffold_2984_curated_15
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11989..12771
DNA (783bp) protein (261aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00037197CC
Opacity protein {ECO:0000313|EMBL:EHR03985.1}; Flags: Precursor;; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
outer-membrane immunogenic protein
SCNpilot_expt_1000_bf_scaffold_2984_curated_16
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12832..13443)
DNA (612bp) protein (204aa)
3-isopropylmalate dehydratase small subunit; K01704 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
3-isopropylmalate dehydratase small subunit {ECO:0000255|HAMAP-Rule:MF_01031}; EC=4.2.1.33 {ECO:0000255|HAMAP-Rule:MF_01031};; Alpha-IPM isomerase {ECO:0000255|HAMAP-Rule:MF_01031}; Short=IPMI {ECO:0000255|HAMAP-Rule:MF_01031};; Isopropylmalate isomerase {ECO:0000255|HAMAP-Rule:MF_01031}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
3-isopropylmalate dehydratase small subunit n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=LEUD_PARL1 rbh
SCNpilot_expt_1000_bf_scaffold_2984_curated_17
unknown

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comp(14070..14786)
DNA (717bp) protein (239aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2984_curated_18
unknown

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15543..16550
DNA (1008bp) protein (336aa)
Porin n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SCP4_9RHIZ
Putative OmpA/MotB domain protein {ECO:0000313|EMBL:CPR21065.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
OmpA/MotB domain-containing protein
SCNpilot_expt_1000_bf_scaffold_2984_curated_19
unknown

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16571..16672
DNA (102bp) protein (34aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2984_curated_20
unknown

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17129..17962
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SGT4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CPR21068.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2984_curated_21
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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18064..19665
DNA (1602bp) protein (534aa)
UPI0003CE5DAE related cluster n=1 Tax=unknown RepID=UPI0003CE5DAE
Uncharacterized protein {ECO:0000313|EMBL:ESY73099.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2984_curated_22
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(19684..19992)
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Methylobacterium extorquens (strain DSM 5838 / DM4) RepID=C7CLT2_METED
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAX26931.1}; TaxID=661410 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain DSM 5838 / DM4) (Methylobacterium; dichloromethanicum (strain DM4)).;"
SCNpilot_expt_1000_bf_scaffold_2984_curated_23
unknown

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20486..20632
DNA (147bp) protein (49aa)

This feature has no annotations

Displaying 23 items

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