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SCNpilot_expt_1000_bf_scaffold_3060_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3060_curated_1
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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100..1374
DNA (1275bp) protein (425aa)
CtpF protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SBN5_9RHIZ
CtpF protein {ECO:0000313|EMBL:AHB47943.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
response regulator receiver protein; K02282 pilus assembly protein CpaE
SCNpilot_expt_1000_bf_scaffold_3060_curated_2
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1387..2877
DNA (1491bp) protein (497aa)
CpaF protein secretory protein kinase n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000378FA01
cpaF; secretory protein kinase, cpaF; K02283 pilus assembly protein CpaF
Secretory protein kinase, cpaF {ECO:0000313|EMBL:CCB63851.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_3060_curated_3
unknown

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2870..3868
DNA (999bp) protein (333aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000381A4FC
Secretion system protein F {ECO:0000313|EMBL:CPR18923.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
type II secretion system protein F; K12510 tight adherence protein B
SCNpilot_expt_1000_bf_scaffold_3060_curated_4
unknown

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3919..4893
DNA (975bp) protein (325aa)
Type II secretion system protein F n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0AZH3_9RHIZ
Type II secretion system protein {ECO:0000313|EMBL:CPR18925.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
type II secretion system protein F
SCNpilot_expt_1000_bf_scaffold_3060_curated_5
Herbaspirillum seropedicae, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5112..6632
DNA (1521bp) protein (507aa)
glpD2; glycerol-3-phosphate dehydrogenase (EC:1.1.5.3); K00111 glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
Glycerol-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361217}; EC=1.1.5.3 {ECO:0000256|RuleBase:RU361217};; TaxID=757424 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum seropedicae (strain SmR1).;"
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00035CFDCA
SCNpilot_expt_1000_bf_scaffold_3060_curated_6
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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6682..8214
DNA (1533bp) protein (511aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000361862E
MlrC family protein 3
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
SCNpilot_expt_1000_bf_scaffold_3060_curated_7
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8381..8767
DNA (387bp) protein (129aa)
Acyl-CoA dehydrogenase n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QLP4_9BRAD
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:ETR78161.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3060_curated_8
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8725..9369
DNA (645bp) protein (215aa)
acyl-CoA dehydrogenase (EC:1.3.99.-); K00257 [EC:1.3.99.-]
Putative acyl-CoA dehydrogenase n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5ET90_BRASB
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:ETR78161.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
SCNpilot_expt_1000_bf_scaffold_3060_curated_9
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9420..10580
DNA (1161bp) protein (387aa)
Acyl-CoA dehydrogenase-like n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q13EH8_RHOPS
acyl-CoA dehydrogenase-like protein
Acyl-CoA dehydrogenase-like {ECO:0000313|EMBL:ABE37511.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_expt_1000_bf_scaffold_3060_curated_10
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

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10594..12747
DNA (2154bp) protein (718aa)
Uncharacterized protein n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TU62_TISMK
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
SCNpilot_expt_1000_bf_scaffold_3060_curated_11
unknown

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comp(12725..13036)
DNA (312bp) protein (104aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3060_curated_12
unknown

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comp(13657..13983)
DNA (327bp) protein (109aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3060_curated_13
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14062..14349
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D5P1_BRAJP
Short-chain dehydrogenase {ECO:0000313|EMBL:KJC54186.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
hypothetical protein
Displaying 13 items

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