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SCNpilot_expt_1000_bf_scaffold_8677_curated

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_8677_curated_1
Komagataeibacter xylinus, Komagataeibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..1167
DNA (1167bp) protein (389aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0003019E07
Oxidoreductase {ECO:0000313|EMBL:GAN98781.1}; TaxID=1234668 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Komagataeibacter.;" source="Komagataeibacter xylinus NBRC 13693.;"
FAD-dependent dehydrogenase; K07137
SCNpilot_expt_1000_bf_scaffold_8677_curated_2
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1148..2338)
DNA (1191bp) protein (397aa)
Monofunctional biosynthetic peptidoglycan transglycosylase {ECO:0000256|SAAS:SAAS00055690}; EC=2.4.-.- {ECO:0000256|SAAS:SAAS00279069};; EC=2.4.2.- {ECO:0000256|SAAS:SAAS00055699};; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
monofunctional biosynthetic peptidoglycan transglycosylase; K03814 monofunctional biosynthetic peptidoglycan transglycosylase [EC:2.4.1.-]
Peptidoglycan transglycosylase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SC56_9RHIZ
SCNpilot_expt_1000_bf_scaffold_8677_curated_3
unknown

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comp(2807..2965)
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8677_curated_4
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3015..3917
DNA (903bp) protein (301aa)
Polyprenyl synthetase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SA43_9RHIZ
Polyprenyl synthetase {ECO:0000313|EMBL:AHB47611.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
polyprenyl synthetase
SCNpilot_expt_1000_bf_scaffold_8677_curated_5
unknown

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4160..5293
DNA (1134bp) protein (378aa)
Malate--CoA ligase subunit beta {ECO:0000313|EMBL:CPR21952.1}; EC=6.2.1.9 {ECO:0000313|EMBL:CPR21952.1};; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
sucC1; succinyl-CoA ligase [ADP-forming] subunit beta (EC:6.2.1.5); K01903 succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
Succinate--CoA ligase (ADP-forming) n=1 Tax=Afipia sp. 1NLS2 RepID=D6V8M5_9BRAD
SCNpilot_expt_1000_bf_scaffold_8677_curated_6
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

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5290..6162
DNA (873bp) protein (291aa)
sucD; succinyl-CoA synthetase subunit alpha; K01902 succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
Succinyl-CoA synthetase, alpha subunit n=1 Tax=Methylobacterium extorquens (strain DSM 5838 / DM4) RepID=C7CBP0_METED
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
SCNpilot_expt_1000_bf_scaffold_8677_curated_7
Methylobacterium sp. GXF4, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6165..6680)
DNA (516bp) protein (172aa)
Phosphoglycolate phosphatase {ECO:0000256|SAAS:SAAS00077902}; EC=3.1.3.18 {ECO:0000256|SAAS:SAAS00077902};; TaxID=1096546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. GXF4.;"
phosphoglycolate phosphatase; K01091 phosphoglycolate phosphatase [EC:3.1.3.18]
Phosphoglycolate phosphatase n=1 Tax=Methylobacterium sp. GXF4 RepID=I9WZV9_9RHIZ
SCNpilot_expt_1000_bf_scaffold_8677_curated_8
unknown

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7113..7613
DNA (501bp) protein (167aa)
single-stranded DNA-binding protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000361163E
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
single-strand binding protein; K03111 single-strand DNA-binding protein
SCNpilot_expt_1000_bf_scaffold_8677_curated_9
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7658..8128)
DNA (471bp) protein (157aa)
Peptide ABC transporter ATP-binding protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TMZ2_9PROT
Peptide ABC transporter ATP-binding protein {ECO:0000313|EMBL:EDP65940.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
oligopeptide transport protein
Displaying 9 items

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