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SCNpilot_expt_1000_bf_scaffold_2036_curated

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2036_curated_1
Amphimedon queenslandica, Amphimedon, Haplosclerida, Demospongiae, Porifera, Metazoa

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comp(2..856)
DNA (855bp) protein (285aa)
Dipeptidase {ECO:0000256|RuleBase:RU341113}; EC=3.4.13.19 {ECO:0000256|RuleBase:RU341113};; TaxID=400682 species="Eukaryota; Metazoa; Porifera; Demospongiae; Haplosclerida; Niphatidae; Amphimedon.;" source="Amphimedon queenslandica (Sponge).;"
Dipeptidase n=1 Tax=Amphimedon queenslandica RepID=I1EZS2_AMPQE
dipeptidase 1-like
SCNpilot_expt_1000_bf_scaffold_2036_curated_2

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comp(892..1677)
DNA (786bp) protein (262aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00035F2C50
Uncharacterized protein {ECO:0000313|EMBL:KGA16414.1}; TaxID=449393 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="freshwater metagenome.;"
polysaccharide deacetylase
SCNpilot_expt_1000_bf_scaffold_2036_curated_3
unknown

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comp(1735..2022)
DNA (288bp) protein (96aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2036_curated_4
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2057..3091)
DNA (1035bp) protein (345aa)
MmgE/PrpD family protein n=2 Tax=Burkholderia pseudomallei RepID=M7EQ50_BURPE
mmgE/PrpD family protein
MmgE/PrpD family protein {ECO:0000313|EMBL:KGW03398.1}; TaxID=1435370 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei MSHR4000.;"
SCNpilot_expt_1000_bf_scaffold_2036_curated_5
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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comp(3088..4119)
DNA (1032bp) protein (344aa)
Oligopeptide ABC transporter ATP-binding protein n=1 Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2BBP9_STRRD
oligopeptide ABC transporter ATP-binding protein; K02032 peptide/nickel transport system ATP-binding protein
Oligopeptide ABC transporter ATP-binding protein {ECO:0000313|EMBL:ACZ86118.1}; TaxID=479432 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
SCNpilot_expt_1000_bf_scaffold_2036_curated_6
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(4103..5092)
DNA (990bp) protein (330aa)
Oligopeptide ABC transporter ATP-binding protein n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67KI9_SYMTH
oligopeptide ABC transporter ATP-binding protein; K02031 peptide/nickel transport system ATP-binding protein
Tax=RBG_13_Deltaproteobacteria_53_10_curated
SCNpilot_expt_1000_bf_scaffold_2036_curated_7
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5092..5949)
DNA (858bp) protein (286aa)
ABC transporter permease n=1 Tax=Bordetella sp. FB-8 RepID=UPI00037632A0
dppC3; Dipeptide ABC transporter, permease component; K02034 peptide/nickel transport system permease protein
Tax=RBG_13_Deltaproteobacteria_53_10_curated
SCNpilot_expt_1000_bf_scaffold_2036_curated_8
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5954..6934)
DNA (981bp) protein (327aa)
Putative glutathione ABC transporter, permease protein GsiC n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZX34_9PROT
dppB; binding-protein dependent transport system inner membrane protein
Tax=RBG_13_Deltaproteobacteria_53_10_curated
SCNpilot_expt_1000_bf_scaffold_2036_curated_9
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6966..8561)
DNA (1596bp) protein (532aa)
Dipeptide ABC transporter, substrate-binding component n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AUA9_AZOBR
dppA; dipeptide ABC transporter, substrate-binding component
Tax=RBG_13_Deltaproteobacteria_53_10_curated
SCNpilot_expt_1000_bf_scaffold_2036_curated_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8692..9795)
DNA (1104bp) protein (368aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000372B92E
Transcriptional regulator, AraC family with amidase-like domain {ECO:0000313|EMBL:KFC75719.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
araC; regulatory protein
SCNpilot_expt_1000_bf_scaffold_2036_curated_11
bacterium YEK0313, Bacteria

Not on your lists

9825..11075
DNA (1251bp) protein (417aa)
sarcosine oxidase subunit beta; K00303 sarcosine oxidase, subunit beta [EC:1.5.3.1]
sarcosine oxidase subunit beta n=1 Tax=Elioraea tepidiphila RepID=UPI000373AD7A
Sarcosine oxidase subunit beta {ECO:0000313|EMBL:CEJ14615.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
SCNpilot_expt_1000_bf_scaffold_2036_curated_12
Acetobacter aceti, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11089..11376
DNA (288bp) protein (96aa)
soxD; sarcosine oxidase subunit delta (EC:1.5.3.1); K00304 sarcosine oxidase, subunit delta [EC:1.5.3.1]
sarcosine oxidase subunit delta n=1 Tax=Methylobacterium sp. MB200 RepID=UPI00034B671E
Sarcosine oxidase delta subunit {ECO:0000313|EMBL:GAN58920.1}; TaxID=887700 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter; Acetobacter subgen. Acetobacter.;" source="Acetobacter aceti NBRC 14818.;"
SCNpilot_expt_1000_bf_scaffold_2036_curated_13
unknown

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comp(11832..12986)
DNA (1155bp) protein (385aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2036_curated_14
unknown

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comp(13035..13586)
DNA (552bp) protein (184aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2036_curated_15
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13883..14326
DNA (444bp) protein (148aa)
sarcosine oxidase subunit alpha; K00302 sarcosine oxidase, subunit alpha [EC:1.5.3.1]
Sarcosine oxidase, alpha subunit family n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IPH5_XANP2
Sarcosine oxidase, alpha subunit family {ECO:0000313|EMBL:ABS69921.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_expt_1000_bf_scaffold_2036_curated_16
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14319..14918
DNA (600bp) protein (200aa)
sarcosine oxidase subunit gamma; K00305 sarcosine oxidase, subunit gamma [EC:1.5.3.1]
Sarcosine oxidase gamma subunit n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1ZG86_METPB
Sarcosine oxidase gamma subunit {ECO:0000313|EMBL:ACB79744.1}; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
SCNpilot_expt_1000_bf_scaffold_2036_curated_17
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15278..15628)
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SEU3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:AHB48479.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
Alkylphosphonate utilization operon protein PhnA
SCNpilot_expt_1000_bf_scaffold_2036_curated_18
unknown

Not on your lists

comp(15820..16014)
DNA (195bp) protein (65aa)

This feature has no annotations

Displaying 18 items

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