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SCNpilot_expt_1000_bf_scaffold_4661_curated

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4661_curated_1
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..175
DNA (174bp) protein (58aa)
GMC type oxidoreductase n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0G239_9BRAD
Choline dehydrogenase {ECO:0000313|EMBL:KJC61052.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
GMC type oxidoreductase
SCNpilot_expt_1000_bf_scaffold_4661_curated_2
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(180..1217)
DNA (1038bp) protein (346aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B3X6_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGK57693.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_expt_1000_bf_scaffold_4661_curated_3
unknown

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comp(1219..1377)
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4661_curated_4
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1377..2489)
DNA (1113bp) protein (371aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000363147D
hypothetical protein; K06918
Uncharacterized protein {ECO:0000313|EMBL:ADJ23450.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_expt_1000_bf_scaffold_4661_curated_5
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2954..4186)
DNA (1233bp) protein (411aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D224_BRAJP
Acyl-CoA transferase {ECO:0000313|EMBL:KGT75594.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4661_curated_6
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4183..5097)
DNA (915bp) protein (305aa)
Hypothetical transmembrane protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J5Y1_POLGS
hypothetical protein
Hypothetical transmembrane protein {ECO:0000313|EMBL:ADZ71235.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_expt_1000_bf_scaffold_4661_curated_7
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5094..6041)
DNA (948bp) protein (316aa)
Hypothetical transmembrane protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J5Y1_POLGS
hypothetical protein
Hypothetical transmembrane protein {ECO:0000313|EMBL:ADZ71235.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_expt_1000_bf_scaffold_4661_curated_8
BJP_IG2158_Rhodobacterales_69_12, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6126..7064)
DNA (939bp) protein (313aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037E4D39
S-adenosylmethionine uptake transporter
Tax=BJP_IG2158_Rhodobacterales_69_12
SCNpilot_expt_1000_bf_scaffold_4661_curated_9
unknown

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comp(7209..7559)
DNA (351bp) protein (117aa)
Cyclic pyranopterin monophosphate synthase {ECO:0000256|HAMAP-Rule:MF_01225, ECO:0000313|EMBL:CPR18205.1}; EC=4.1.99.18 {ECO:0000256|HAMAP-Rule:MF_01225, ECO:0000313|EMBL:CPR18205.1};; Molybdenum cofactor biosynthesis protein A {ECO:0000256|HAMAP-Rule:MF_01225}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
Cyclic pyranopterin monophosphate synthase n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BFE7_9RHIZ
molybdenum cofactor biosynthesis protein A
SCNpilot_expt_1000_bf_scaffold_4661_curated_10

Not on your lists

7660..8244
DNA (585bp) protein (195aa)
Uncharacterized protein (Fragment) n=1 Tax=uncultured bacterium RepID=K2AF52_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD60276.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4661_curated_11
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8440..9288
DNA (849bp) protein (283aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
Histidine kinase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SF73_9RHIZ
histidine kinase
SCNpilot_expt_1000_bf_scaffold_4661_curated_12
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9348..11297
DNA (1950bp) protein (650aa)
Putative uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JQV1_HYPDA
hypothetical protein; K06915
Uncharacterized protein {ECO:0000313|EMBL:ADJ22103.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_expt_1000_bf_scaffold_4661_curated_13
unknown

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11972..12409
DNA (438bp) protein (146aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4661_curated_14

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comp(12439..12972)
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2BIT5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD61954.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_expt_1000_bf_scaffold_4661_curated_15
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13225..13506
DNA (282bp) protein (94aa)
acetohydroxy acid isomeroreductase-like protein; K00053 ketol-acid reductoisomerase [EC:1.1.1.86]
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomeroreductase {ECO:0000256|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
Ketol-acid reductoisomerase n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J2C9_POLGS
SCNpilot_expt_1000_bf_scaffold_4661_curated_16
unknown

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comp(13738..15081)
DNA (1344bp) protein (448aa)
2-hydroxy-acid oxidase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SDI3_9RHIZ
Glycolate oxidase iron-sulfur subunit {ECO:0000256|PIRNR:PIRNR000139, ECO:0000313|EMBL:CPR15036.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
glcF; glycolate oxidase iron-sulfur subunit; K11473 glycolate oxidase iron-sulfur subunit
SCNpilot_expt_1000_bf_scaffold_4661_curated_17
unknown

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comp(15094..16311)
DNA (1218bp) protein (406aa)
FAD-linked oxidase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SBV2_9RHIZ
FAD-linked oxidase {ECO:0000313|EMBL:CPR15034.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
FAD linked oxidase domain-containing protein; K11472 glycolate oxidase FAD binding subunit
SCNpilot_expt_1000_bf_scaffold_4661_curated_18
unknown

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comp(16314..16472)
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4661_curated_19
unknown

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comp(16477..17112)
DNA (636bp) protein (212aa)
FAD linked oxidase domain-containing protein; K00104 glycolate oxidase [EC:1.1.3.15]
FAD-binding protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000364F56C
Glycolate oxidase subunit, FAD-linked {ECO:0000313|EMBL:CPR15031.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
Displaying 19 items

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