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SCNpilot_expt_1000_bf_scaffold_14063_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_14063_curated_1
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..464)
DNA (462bp) protein (154aa)
ATP-dependent protease n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5S9G0_9RHIZ
ATP-dependent protease ATPase subunit HslU {ECO:0000256|HAMAP-Rule:MF_00249, ECO:0000256|SAAS:SAAS00089650}; Unfoldase HslU {ECO:0000256|HAMAP-Rule:MF_00249}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
heat shock protein HslVU, ATPase HslU; K03667 ATP-dependent HslUV protease ATP-binding subunit HslU
SCNpilot_expt_1000_bf_scaffold_14063_curated_2
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(514..945)
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Cupriavidus basilensis OR16 RepID=H1SGS7_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EHP38252.1}; TaxID=1127483 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis OR16.;"
SCNpilot_expt_1000_bf_scaffold_14063_curated_3
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3003..3971
DNA (969bp) protein (323aa)
boxB; benzoyl-CoA oxygenase subunit B; K15512 benzoyl-CoA 2,3-dioxygenase component B [EC:1.14.12.21]
Benzoyl-CoA oxygenase, component B n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EQU5_BRASB
Benzoyl-CoA oxygenase, component B {ECO:0000313|EMBL:ABQ38539.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
SCNpilot_expt_1000_bf_scaffold_14063_curated_4
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4178..5077
DNA (900bp) protein (300aa)
cell-binding factor 2; K03769 peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
Putative cell-binding factor 2 (Major antigen peb4A), cbf2 n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JD28_HYPSM
SCNpilot_expt_1000_bf_scaffold_14063_curated_5
unknown

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5406..5771
DNA (366bp) protein (122aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_14063_curated_6
unknown

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5827..5967
DNA (141bp) protein (47aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_14063_curated_7
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5984..6427
DNA (444bp) protein (148aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISS6_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66436.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_14063_curated_8
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6438..7028
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B4C8_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGK57868.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_expt_1000_bf_scaffold_14063_curated_9
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7030..7941
DNA (912bp) protein (304aa)
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B2W4_9RHIZ
nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase {ECO:0000313|EMBL:AGK57869.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_expt_1000_bf_scaffold_14063_curated_10
unknown

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8013..8741
DNA (729bp) protein (243aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JDI7_HYPSM
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:CPR21684.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_1000_bf_scaffold_14063_curated_11
unknown

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8874..9923
DNA (1050bp) protein (350aa)
cysK2; cysteine synthase CysK (EC:2.5.1.47); K01738 cysteine synthase A [EC:2.5.1.47]
Cysteine synthase n=2 Tax=Oligotropha carboxidovorans RepID=B6JI35_OLICO
Pyridoxal-5'-phosphate-dependent enzyme, beta subunit {ECO:0000313|EMBL:CPR20884.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
SCNpilot_expt_1000_bf_scaffold_14063_curated_12
unknown

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9928..10086
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_14063_curated_13
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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10091..10636
DNA (546bp) protein (182aa)
Alanyl-transfer RNA synthetase domain protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IXB9_POLGS
alaS2; alanyl-tRNA synthetase; K07050
Alanyl-transfer RNA synthetase domain protein {ECO:0000313|EMBL:ADZ70437.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
Displaying 13 items

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