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SCNpilot_expt_1000_bf_scaffold_8577_curated

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_8577_curated_1
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..868
DNA (867bp) protein (289aa)
Transcriptional regulatory protein ompR n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J7D0_HYPSM
Uncharacterized protein {ECO:0000313|EMBL:KKC33994.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
ompR; transcriptional regulatory protein ompR
SCNpilot_expt_1000_bf_scaffold_8577_curated_2
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1261..1995)
DNA (735bp) protein (245aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00035CAA14
lipid A ABC exporter family, fused ATPase and inner membrane subunits; K06147 ATP-binding cassette, subfamily B, bacterial
Lipid A ABC exporter family, fused ATPase and inner membrane subunits {ECO:0000313|EMBL:ACL58249.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
SCNpilot_expt_1000_bf_scaffold_8577_curated_3
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2519..2785
DNA (267bp) protein (89aa)
Uncharacterized protein n=3 Tax=Brucella abortus RepID=N7UU52_BRUAO
Uncharacterized protein {ECO:0000313|EMBL:CEG09422.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
SCNpilot_expt_1000_bf_scaffold_8577_curated_4
unknown

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2852..2977
DNA (126bp) protein (42aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8577_curated_5
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3412..3741)
DNA (330bp) protein (110aa)
Phasin family protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SFZ0_9RHIZ
Phasin family protein {ECO:0000313|EMBL:AHB49417.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
phasin family protein
SCNpilot_expt_1000_bf_scaffold_8577_curated_6
unknown

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4135..5250
DNA (1116bp) protein (372aa)
serine-type D-Ala-D-Ala carboxypeptidase (EC:3.4.16.4)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000373E248
D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:CPR15372.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
SCNpilot_expt_1000_bf_scaffold_8577_curated_7
unknown

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5623..6279
DNA (657bp) protein (219aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI000381193C
SCNpilot_expt_1000_bf_scaffold_8577_curated_8
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6413..7216
DNA (804bp) protein (268aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000372C50A
lytic murein transglycosylase
Lytic murein transglycosylase {ECO:0000313|EMBL:ADJ24833.1}; Flags: Precursor;; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_expt_1000_bf_scaffold_8577_curated_9
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

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7473..8987
DNA (1515bp) protein (505aa)
Drug resistance transporter, EmrB/QacA subfamily protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TTM7_9PROT
EmrB/QacA family drug resistance transporter; K03446 MFS transporter, DHA2 family, multidrug resistance protein B
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
SCNpilot_expt_1000_bf_scaffold_8577_curated_10
unknown

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comp(9255..9812)
DNA (558bp) protein (186aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8577_curated_11
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10349..11116
DNA (768bp) protein (256aa)
Clp domain protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J9W2_HYPSM
Clp domain-containing protein
Clp domain protein {ECO:0000313|EMBL:CCB66179.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_8577_curated_12
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11377..12669
DNA (1293bp) protein (431aa)
Putative homoserine dehydrogenase n=1 Tax=Bradyrhizobium sp. YR681 RepID=J2VXX5_9BRAD
Putative homoserine dehydrogenase {ECO:0000313|EMBL:EJN11127.1}; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
oxidoreductase domain-containing protein
Displaying 12 items

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