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SCNpilot_expt_1000_bf_scaffold_2191_curated

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2191_curated_1
bacterium YEK0313, Bacteria

Not on your lists

comp(3..1385)
DNA (1383bp) protein (461aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3HZP9_9BRAD
Tripartite tricarboxylate transporter TctA family protein {ECO:0000313|EMBL:CEJ09959.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2191_curated_2
bacterium YEK0313, Bacteria

Not on your lists

comp(1382..1903)
DNA (522bp) protein (174aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YLC0_9BRAD
Tripartite tricarboxylate transporter TctB family protein {ECO:0000313|EMBL:CEJ09960.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2191_curated_3
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1980..2972)
DNA (993bp) protein (331aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YLC1_9BRAD
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:EHR02214.1}; Flags: Precursor;; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
SCNpilot_expt_1000_bf_scaffold_2191_curated_4
Klebsiella pneumoniae, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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3176..3589
DNA (414bp) protein (138aa)
endoribonuclease n=1 Tax=gamma proteobacterium SCGC AB-629-P17 RepID=UPI000362563F
Putative plasmid stability {ECO:0000313|EMBL:AHG55811.1}; Putative translational inhibition {ECO:0000313|EMBL:AET17165.1}; Putative translational inhibition protein {ECO:0000313|EMBL:AHG55608.1}; TaxID=573 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella pneumoniae.;"
endoribonuclease L-PSP
SCNpilot_expt_1000_bf_scaffold_2191_curated_5
Azoarcus sp. BH72, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3665..3916)
DNA (252bp) protein (84aa)
Conserved hypothetical secreted protein n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1K1V7_AZOSB
hypothetical protein
Conserved hypothetical secreted protein {ECO:0000313|EMBL:CAL92812.1}; TaxID=62928 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. (strain BH72).;"
SCNpilot_expt_1000_bf_scaffold_2191_curated_6
bacterium YEK0313, Bacteria

Not on your lists

comp(4041..5108)
DNA (1068bp) protein (356aa)
ABC-type branched-chain amino acid transport system, permease component n=1 Tax=Microvirga sp. WSM3557 RepID=I4YW38_9RHIZ
Leucine/isoleucine/valine transporter permease subunit {ECO:0000313|EMBL:CEJ15059.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_2191_curated_7
bacterium YEK0313, Bacteria

Not on your lists

comp(5118..6137)
DNA (1020bp) protein (340aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium JGI 0001004-K23 RepID=UPI00037F7B2E
High-affinity branched-chain amino acid transport system permease protein LivH {ECO:0000313|EMBL:CEJ15060.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
ABC transporter permease; K01997 branched-chain amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_2191_curated_8
bacterium YEK0313, Bacteria

Not on your lists

comp(6147..6872)
DNA (726bp) protein (242aa)
ABC transporter ATP-binding protein n=1 Tax=Massilia niastensis RepID=UPI00036D81FE
High-affinity branched-chain amino acid transport ATP-binding protein LivF {ECO:0000313|EMBL:CEJ15061.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
livF; High-affinity branched-chain amino acid transport ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_2191_curated_9
bacterium YEK0313, Bacteria

Not on your lists

comp(6869..7654)
DNA (786bp) protein (262aa)
Branched-chain amino acid ABC transporter, ATP-binding protein n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R951_9RHOB
Lipopolysaccharide export system ATP-binding protein LptB {ECO:0000313|EMBL:CEJ15062.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
ABC transporter ATPase; K01995 branched-chain amino acid transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_2191_curated_10
bacterium YEK0313, Bacteria

Not on your lists

comp(7738..8958)
DNA (1221bp) protein (407aa)
ABC-type branched-chain amino acid transport system, periplasmic component n=1 Tax=Microvirga sp. WSM3557 RepID=I4YW42_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CEJ15063.1}; Flags: Precursor;; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
branched-chain amino acid ABC transporter substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_2191_curated_11
bacterium YEK0313, Bacteria

Not on your lists

9081..9701
DNA (621bp) protein (207aa)
Regulatory protein, TetR n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CBN6_9RHOB
Putative HTH-type transcriptional regulator YvdT {ECO:0000313|EMBL:CEJ15064.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2191_curated_12
unknown

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comp(9781..10065)
DNA (285bp) protein (95aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2191_curated_13
bacterium YEK0313, Bacteria

Not on your lists

10387..11244
DNA (858bp) protein (286aa)
O-succinylbenzoic acid--CoA ligase; K00666 fatty-acyl-CoA synthase [EC:6.2.1.-]
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI00037D9689
Long-chain-fatty-acid--CoA ligase FadD13 {ECO:0000313|EMBL:CEJ15066.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
SCNpilot_expt_1000_bf_scaffold_2191_curated_14
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11248..12033)
DNA (786bp) protein (262aa)
Penicillin acylase II (EC:3.5.1.11); K01434 penicillin amidase [EC:3.5.1.11]
penicillin acylase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003028CA2
Penicillin acylase {ECO:0000313|EMBL:AHY59670.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
SCNpilot_expt_1000_bf_scaffold_2191_curated_15
unknown

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12396..12581
DNA (186bp) protein (62aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2191_curated_16
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

13260..13805
DNA (546bp) protein (182aa)
Uncharacterized protein {ECO:0000313|EMBL:KIJ71106.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
SCNpilot_expt_1000_bf_scaffold_2191_curated_17
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13858..14583
DNA (726bp) protein (242aa)
Uncharacterized protein n=1 Tax=Sinorhizobium meliloti GR4 RepID=M4IRK7_RHIML
TetR family transcriptional regulator
Putative transcriptional regulator, TetR family protein {ECO:0000313|EMBL:CAC49274.2}; TaxID=266834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium; meliloti).;"
SCNpilot_expt_1000_bf_scaffold_2191_curated_18
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15015..15596
DNA (582bp) protein (194aa)
Efflux pump membrane fusion protein n=1 Tax=Rhizobium sp. CCGE 510 RepID=J5MTM6_9RHIZ
hypothetical protein; K01993 HlyD family secretion protein
Probable protein secretion protein, HlyD family {ECO:0000313|EMBL:ACE92442.1}; TaxID=491916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CIAT 652).;"
SCNpilot_expt_1000_bf_scaffold_2191_curated_19
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15593..16282
DNA (690bp) protein (230aa)
ABC-type multidrug transport system, ATPase component n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0W6V6_RHILT
ABC-type multidrug transport system, ATPase component {ECO:0000313|EMBL:EJC80898.1}; TaxID=754762 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2297.;"
ABC transporter; K01990 ABC-2 type transport system ATP-binding protein
Displaying 19 items

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