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SCNpilot_expt_1000_bf_scaffold_6837_curated

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6837_curated_1
unknown

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comp(2..205)
DNA (204bp) protein (68aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6837_curated_2
unknown

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comp(221..439)
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6837_curated_3
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

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comp(486..725)
DNA (240bp) protein (80aa)
Putative DNA coupling protein (Fragment) n=1 Tax=Ralstonia pickettii RepID=B6VNU7_RALPI
Uncharacterized protein {ECO:0000313|EMBL:KIJ70710.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
SCNpilot_expt_1000_bf_scaffold_6837_curated_4
unknown

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994..1194
DNA (201bp) protein (67aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6837_curated_5

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1531..1749
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=uncultured bacterium A1Q1_fos_75 RepID=L7VVB4_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AGC71256.1}; TaxID=1256589 species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_75.;"
SCNpilot_expt_1000_bf_scaffold_6837_curated_6

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1742..2746
DNA (1005bp) protein (335aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037F07B7
Conjugative transfer protein TrbB {ECO:0000313|EMBL:AGC71255.1}; TaxID=1256589 species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_75.;"
P-type conjugative transfer ATPase TrbB; K03196 type IV secretion system protein VirB11
SCNpilot_expt_1000_bf_scaffold_6837_curated_7

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3220..3492
DNA (273bp) protein (91aa)
Conjugative transfer protein TrbD n=1 Tax=uncultured bacterium A1Q1_fos_75 RepID=L7VW30_9BACT
Conjugative transfer protein TrbD {ECO:0000313|EMBL:AGC71253.1}; TaxID=1256589 species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_75.;"
Conjugative transfer protein TrbD; K03198 type IV secretion system protein VirB3
SCNpilot_expt_1000_bf_scaffold_6837_curated_8
unknown

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comp(4517..5227)
DNA (711bp) protein (237aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6837_curated_9
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5423..6805
DNA (1383bp) protein (461aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00035DB043
Uncharacterized protein {ECO:0000313|EMBL:ERM01652.1}; TaxID=1337887 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium 229E.;"
trbE; Conjugative transfer protein TrbE; K03199 type IV secretion system protein VirB4
SCNpilot_expt_1000_bf_scaffold_6837_curated_10

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7098..8384
DNA (1287bp) protein (429aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037507D5
Conjugative transfer protein TrbL {ECO:0000313|EMBL:AGC71249.1}; TaxID=1256589 species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_75.;"
conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL
SCNpilot_expt_1000_bf_scaffold_6837_curated_11

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8398..9096
DNA (699bp) protein (233aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000380D457
Conjugative transfer protein TrbF {ECO:0000313|EMBL:AGC71248.1}; TaxID=1256589 species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_75.;"
Conjugal transfer protein; K03200 type IV secretion system protein VirB5
SCNpilot_expt_1000_bf_scaffold_6837_curated_12

Not on your lists

9093..10091
DNA (999bp) protein (333aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00035CCDD0
Conjugative transfer protein TrbG {ECO:0000313|EMBL:AGC71247.1}; TaxID=1256589 species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_75.;"
conjugative transfer protein TrbG; K03204 type IV secretion system protein VirB9
SCNpilot_expt_1000_bf_scaffold_6837_curated_13

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10469..11071
DNA (603bp) protein (201aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003630481
Conjugative transfer protein TrbI {ECO:0000313|EMBL:AGC71246.1}; TaxID=1256589 species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_75.;"
conjugal transfer protein trbI; K03195 type IV secretion system protein VirB10
SCNpilot_expt_1000_bf_scaffold_6837_curated_14

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11065..11337
DNA (273bp) protein (91aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003630481
Conjugative transfer protein TrbI {ECO:0000313|EMBL:AGC71246.1}; TaxID=1256589 species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_75.;"
conjugation TrbI family protein; K03195 type IV secretion system protein VirB10
SCNpilot_expt_1000_bf_scaffold_6837_curated_15

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11356..11676
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003630C8F
Uncharacterized protein {ECO:0000313|EMBL:AGC71245.1}; TaxID=1256589 species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_75.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6837_curated_16
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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11681..12211
DNA (531bp) protein (177aa)
thioesterase superfamily protein; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-]
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa 19660 RepID=U9AIM5_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:ERV69601.1}; TaxID=1402545 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa BL04.;"
SCNpilot_expt_1000_bf_scaffold_6837_curated_17
unknown

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12218..12355
DNA (138bp) protein (46aa)

This feature has no annotations

Displaying 17 items

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