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SCNpilot_expt_1000_bf_scaffold_9193_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_9193_curated_1
unknown

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comp(2..361)
DNA (360bp) protein (120aa)
Pyrimidine 5'-nucleotidase n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JXN0_HYPDA
Putative Pyrimidine 5-nucleotidase (HAD-superfamily hydrolase) {ECO:0000313|EMBL:CPR16766.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
pyrimidine 5'-nucleotidase; K07025 putative hydrolase of the HAD superfamily
SCNpilot_expt_1000_bf_scaffold_9193_curated_2
unknown

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comp(358..1305)
DNA (948bp) protein (316aa)
Acetylglutamate kinase {ECO:0000256|HAMAP-Rule:MF_00082, ECO:0000256|SAAS:SAAS00245375}; EC=2.7.2.8 {ECO:0000256|HAMAP-Rule:MF_00082, ECO:0000256|SAAS:SAAS00245383};; N-acetyl-L-glutamate 5-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00082}; NAG kinase {ECO:0000256|HAMAP-Rule:MF_00082}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
acetylglutamate kinase; K00930 acetylglutamate kinase [EC:2.7.2.8]
Acetylglutamate kinase n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JXN1_HYPDA
SCNpilot_expt_1000_bf_scaffold_9193_curated_3
unknown

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comp(1490..2041)
DNA (552bp) protein (184aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9193_curated_4
unknown

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2352..2894
DNA (543bp) protein (181aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9193_curated_5
unknown

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3042..3527
DNA (486bp) protein (162aa)
Clp protease n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SC14_9RHIZ
Clp protease {ECO:0000313|EMBL:CPR16771.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
Clp domain-containing protein
SCNpilot_expt_1000_bf_scaffold_9193_curated_6

Not on your lists

3860..4699
DNA (840bp) protein (280aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI000362949C
hypothetical protein
Marine sediment metagenome DNA, contig: S01H1_S40130 {ECO:0000313|EMBL:GAG52429.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SCNpilot_expt_1000_bf_scaffold_9193_curated_7
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4709..5134)
DNA (426bp) protein (142aa)
mth1; 7,8-dihydro-8-oxoguanine triphosphatase; K03574 7,8-dihydro-8-oxoguanine triphosphatase [EC:3.6.1.-]
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036E39EB
NTP pyrophosphohydrolase {ECO:0000313|EMBL:AHB47226.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
SCNpilot_expt_1000_bf_scaffold_9193_curated_8
RBG_16_Alphaproteobacteria_64_48_curated, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5131..6513)
DNA (1383bp) protein (461aa)
ABC-1 domain-containing protein n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I504_RHOVT
ABC transporter
Tax=RBG_16_Alphaproteobacteria_64_48_curated
SCNpilot_expt_1000_bf_scaffold_9193_curated_9
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6622..6855)
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BA97_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGK59938.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_expt_1000_bf_scaffold_9193_curated_10
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7236..7961
DNA (726bp) protein (242aa)
hypothetical protein n=1 Tax=Xanthobacteraceae bacterium 501b RepID=UPI00037D3E40
cytochrome B561
Cytochrome B561 {ECO:0000313|EMBL:ADH89403.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_expt_1000_bf_scaffold_9193_curated_11
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7976..8599)
DNA (624bp) protein (208aa)
hypothetical protein; K01975 2'-5' RNA ligase [EC:6.5.1.-]
Uncharacterized protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9J7J3_AGRRK
2'-5' RNA ligase {ECO:0000313|EMBL:KFC69060.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_expt_1000_bf_scaffold_9193_curated_12
unknown

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comp(8907..9101)
DNA (195bp) protein (65aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9193_curated_13
unknown

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comp(9106..9384)
DNA (279bp) protein (93aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9193_curated_14
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9703..10026)
DNA (324bp) protein (108aa)
aminotransferase class-III; K15785 L-2,4-diaminobutyrate transaminase [EC:2.6.1.-]
Uncharacterized protein n=1 Tax=Osedax symbiont Rs1 RepID=S6GFT1_9GAMM
Aminotransferase {ECO:0000313|EMBL:EWY39564.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
Displaying 14 items

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