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SCNpilot_expt_1000_bf_scaffold_3869_curated

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3869_curated_1
unknown

Not on your lists

comp(3..1103)
DNA (1101bp) protein (367aa)
glucosyltransferase MdoH; K03669 membrane glycosyltransferase [EC:2.4.1.-]
Glucosyltransferase MdoH n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JX88_HYPDA
Glucosyltransferase MdoH {ECO:0000313|EMBL:CPR19454.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
SCNpilot_expt_1000_bf_scaffold_3869_curated_2
unknown

Not on your lists

1140..2222
DNA (1083bp) protein (361aa)
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI00036739DF
Alcohol dehydrogenase zinc-binding domain protein {ECO:0000313|EMBL:CPR19452.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
alcohol dehydrogenase
SCNpilot_expt_1000_bf_scaffold_3869_curated_3
unknown

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comp(2229..2396)
DNA (168bp) protein (56aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003784A74
SCNpilot_expt_1000_bf_scaffold_3869_curated_4
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2354..3499)
DNA (1146bp) protein (382aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003784A74
Membrane protein
Membrane protein {ECO:0000313|EMBL:CCJ06230.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCNpilot_expt_1000_bf_scaffold_3869_curated_5
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3631..3969)
DNA (339bp) protein (113aa)
sn-glycerol 3-phosphate transport protein (ABC superfamily, atp_bind) n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SHA2_9BRAD
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EJZ28974.1}; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
ugpC; sn-glycerol 3-phosphate ABC transporter ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_3869_curated_6
unknown

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4910..5083
DNA (174bp) protein (58aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3869_curated_7
unknown

Not on your lists

5165..5386
DNA (222bp) protein (74aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3869_curated_8
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5631..6563)
DNA (933bp) protein (311aa)
Carbohydrate ABC transporter membrane protein 1, CUT1 family n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EJ37_BRASB
permease of sugar ABC transporter
Carbohydrate ABC transporter membrane protein 1, CUT1 family {ECO:0000313|EMBL:ABQ36181.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
SCNpilot_expt_1000_bf_scaffold_3869_curated_9
bacterium YEK0313, Bacteria

Not on your lists

comp(6746..8086)
DNA (1341bp) protein (447aa)
ABC transporter substrate-binding protein, periplasmic component n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4YUK7_BRASO
Bacterial extracellular solute-binding protein {ECO:0000313|EMBL:CEJ15203.1}; Flags: Precursor;; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
ABC transporter substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_3869_curated_10
unknown

Not on your lists

8574..8735
DNA (162bp) protein (54aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3869_curated_11
unknown

Not on your lists

9024..9290
DNA (267bp) protein (89aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3869_curated_12
unknown

Not on your lists

comp(10045..10335)
DNA (291bp) protein (97aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3869_curated_13
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10498..10677
DNA (180bp) protein (60aa)
panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase; K00606 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
3-methyl-2-oxobutanoate hydroxymethyltransferase {ECO:0000255|HAMAP-Rule:MF_00156}; EC=2.1.2.11 {ECO:0000255|HAMAP-Rule:MF_00156};; Ketopantoate hydroxymethyltransferase {ECO:0000255|HAMAP-Rule:MF_00156}; Short=KPHMT {ECO:0000255|HAMAP-Rule:MF_00156};; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
3-methyl-2-oxobutanoate hydroxymethyltransferase n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=PANB_PARDP
SCNpilot_expt_1000_bf_scaffold_3869_curated_14
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10779..11798
DNA (1020bp) protein (340aa)
Aldo/keto reductase n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8ILW9_METNO
aldo/keto reductase
Aldo/keto reductase {ECO:0000313|EMBL:ACL56313.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
SCNpilot_expt_1000_bf_scaffold_3869_curated_15
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11799..12773)
DNA (975bp) protein (325aa)
Oxidoreductase n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FA56_9RHIZ
Oxidoreductase {ECO:0000313|EMBL:ESX57057.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
2-nitropropane dioxygenase NPD
SCNpilot_expt_1000_bf_scaffold_3869_curated_16
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(12803..13597)
DNA (795bp) protein (265aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036969D2
enoyl-CoA hydratase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
SCNpilot_expt_1000_bf_scaffold_3869_curated_17
unknown

Not on your lists

comp(13869..15068)
DNA (1200bp) protein (400aa)
Succinyl-CoA ligase [ADP-forming] subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; EC=6.2.1.5 {ECO:0000256|HAMAP-Rule:MF_00558, ECO:0000313|EMBL:CPR17146.1};; Succinyl-CoA synthetase subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
sucC; succinyl-CoA synthetase subunit beta (EC:6.2.1.5); K01903 succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
Succinyl-CoA ligase [ADP-forming] subunit beta n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JD09_HYPSM
SCNpilot_expt_1000_bf_scaffold_3869_curated_18
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15197..15583
DNA (387bp) protein (129aa)
Uncharacterized protein {ECO:0000313|EMBL:ETR76419.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
SCNpilot_expt_1000_bf_scaffold_3869_curated_19
unknown

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comp(15599..15997)
DNA (399bp) protein (133aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3869_curated_20
unknown

Not on your lists

16196..16354
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3869_curated_21
unknown

Not on your lists

16397..16990
DNA (594bp) protein (198aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3869_curated_22
unknown

Not on your lists

comp(16987..17793)
DNA (807bp) protein (269aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037AE691
Uncharacterized protein {ECO:0000313|EMBL:CPR16372.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
ErfK/YbiS/YcfS/YnhG family protein
Displaying 22 items

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