ggKbase home page

SCNpilot_expt_1000_bf_scaffold_3868_curated

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3868_curated_1
unknown

Not on your lists

comp(3..152)
DNA (150bp) protein (50aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3868_curated_2
unknown

Not on your lists

939..2117
DNA (1179bp) protein (393aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00035C8EE7
Cytochrome C biogenesis protein {ECO:0000313|EMBL:CPR22009.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
cytochrome C biogenesis protein CcmI
SCNpilot_expt_1000_bf_scaffold_3868_curated_3
unknown

Not on your lists

comp(2906..3103)
DNA (198bp) protein (66aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3868_curated_4
unknown

Not on your lists

3213..4652
DNA (1440bp) protein (480aa)
heme lyase subunit CcmF n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003641C15
Heme lyase, CcmF subunit {ECO:0000313|EMBL:CPR22007.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
cytochrome c-type biogenesis protein CcmF
SCNpilot_expt_1000_bf_scaffold_3868_curated_5
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4658..5137
DNA (480bp) protein (160aa)
cytochrome C biogenesis protein CcmH n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003709AA6
cytochrome C biogenesis protein; K02200 cytochrome c-type biogenesis protein CcmH
Cytochrome C biogenesis protein {ECO:0000313|EMBL:ACL59043.1}; Flags: Precursor;; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
SCNpilot_expt_1000_bf_scaffold_3868_curated_6
unknown

Not on your lists

5265..5633
DNA (369bp) protein (123aa)
Transcriptional regulator, ArsR family n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JT17_HYPDA
Uncharacterized protein {ECO:0000313|EMBL:CPR21395.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
ArsR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_3868_curated_7
unknown

Not on your lists

5630..5980
DNA (351bp) protein (117aa)
Sulfur/thiosulfate oxidation protein SoxE n=1 Tax=uncultured bacterium ws406H10 RepID=I1X5E9_9BACT
Putative Cytochrome subunit of sulfide dehydrogenase {ECO:0000313|EMBL:CPR21942.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3868_curated_8
Pseudomonas sp. 21, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6026..8122)
DNA (2097bp) protein (699aa)
Enoyl-CoA hydratase n=1 Tax=Pseudomonas denitrificans ATCC 13867 RepID=M4WS79_PSEDE
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:KJJ98570.1}; TaxID=1619948 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 21.;"
enoyl-CoA hydratase
SCNpilot_expt_1000_bf_scaffold_3868_curated_9
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8248..9885
DNA (1638bp) protein (546aa)
long-chain fatty acid--CoA ligase n=1 Tax=Oceanicola sp. S124 RepID=UPI00025588CD
Long-chain fatty acid--CoA ligase {ECO:0000313|EMBL:KFG70108.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
acyl-CoA synthetase/AMP-acid ligase
SCNpilot_expt_1000_bf_scaffold_3868_curated_10
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9980..10726)
DNA (747bp) protein (249aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002E37635
Uncharacterized protein {ECO:0000313|EMBL:KJC41431.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3868_curated_11
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10881..12494)
DNA (1614bp) protein (538aa)
pyrG; CTP synthase (EC:6.3.4.2); K01937 CTP synthase [EC:6.3.4.2]
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
CTP synthetase n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000381E26B
SCNpilot_expt_1000_bf_scaffold_3868_curated_12
unknown

Not on your lists

comp(12506..12607)
DNA (102bp) protein (34aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3868_curated_13
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12623..13024)
DNA (402bp) protein (134aa)
Preprotein translocase, SecG subunit n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JXQ4_HYPDA
preprotein translocase subunit SecG; K03075 preprotein translocase subunit SecG
Preprotein translocase, SecG subunit {ECO:0000313|EMBL:ADJ23263.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_expt_1000_bf_scaffold_3868_curated_14
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13194..13892)
DNA (699bp) protein (233aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00035CF819
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADJ23261.1}; Flags: Precursor;; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_expt_1000_bf_scaffold_3868_curated_15
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13918..14670)
DNA (753bp) protein (251aa)
tpiA; Triosephosphate isomerase 1; K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1]
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
triosephosphate isomerase n=1 Tax=Pannonibacter phragmitetus RepID=UPI000372D504
SCNpilot_expt_1000_bf_scaffold_3868_curated_16
unknown

Not on your lists

14943..16841
DNA (1899bp) protein (633aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
PpiC-type peptidyl-prolyl cis-trans isomerase; K03770 peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SCZ4_9RHIZ
SCNpilot_expt_1000_bf_scaffold_3868_curated_17
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16861..17205)
DNA (345bp) protein (115aa)
Heme biosynthesis protein HemY n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SEU6_9RHIZ
Heme biosynthesis protein HemY {ECO:0000313|EMBL:AHB48575.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
iron-sulfur cluster assembly accessory protein
SCNpilot_expt_1000_bf_scaffold_3868_curated_18
unknown

Not on your lists

17354..18658
DNA (1305bp) protein (435aa)
deoxyguanosinetriphosphate triphosphohydrolase; K01129 dGTPase [EC:3.1.5.1]
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003797834
Deoxyguanosinetriphosphate triphosphohydrolase-like protein {ECO:0000256|HAMAP-Rule:MF_01212}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
SCNpilot_expt_1000_bf_scaffold_3868_curated_19
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


18717..19775
DNA (1059bp) protein (353aa)
arginyl-tRNA synthetase (EC:6.1.1.19); K01887 arginyl-tRNA synthetase [EC:6.1.1.19]
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00035D1CC2
Displaying 19 items

View Taxonomy