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SCNpilot_expt_1000_bf_scaffold_6338_curated

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6338_curated_1
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(203..406)
DNA (204bp) protein (68aa)
sulfurtransferase n=1 Tax=Methyloferula stellata RepID=UPI0003800316
Sulfurtransferase {ECO:0000313|EMBL:KGD96968.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6338_curated_2
Ochrobactrum sp. CDB2, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(420..1640)
DNA (1221bp) protein (407aa)
Major facilitator superfamily transporter n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3J2U9_9RHIZ
Major facilitator superfamily transporter {ECO:0000313|EMBL:EMG53306.1}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
major facilitator transporter
SCNpilot_expt_1000_bf_scaffold_6338_curated_3
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1817..2404
DNA (588bp) protein (196aa)
Transcriptional regulator, ArsR family n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q212C1_RHOPB
ArsR family transcriptional regulator
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:ABD88765.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_expt_1000_bf_scaffold_6338_curated_4
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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2460..3452
DNA (993bp) protein (331aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J5PJ56_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EJW11022.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
putative HlyD family secretion efflux protein
SCNpilot_expt_1000_bf_scaffold_6338_curated_5
Bradyrhizobium sp. ORS 285, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3449..6646
DNA (3198bp) protein (1066aa)
Putative cation/multidrug efflux pump of the AcrB/AcrD/AcrF family n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0RP30_9BRAD
Putative cation/multidrug efflux pump of the AcrB/AcrD/AcrF family {ECO:0000313|EMBL:CCD83707.1}; TaxID=115808 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 285.;"
AcrB/AcrD/AcrF family cation mulitdrug efflux protein
SCNpilot_expt_1000_bf_scaffold_6338_curated_6
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6907..7155)
DNA (249bp) protein (83aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003799773
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGK56762.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_expt_1000_bf_scaffold_6338_curated_7
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7162..7419)
DNA (258bp) protein (86aa)
FkbH like protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B888_9RHIZ
FkbH like protein
FkbH like protein {ECO:0000313|EMBL:AGK56761.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_expt_1000_bf_scaffold_6338_curated_8
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9393..10598)
DNA (1206bp) protein (402aa)
MaoC domain-containing protein dehydratase; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
MaoC domain protein dehydratase n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JSC3_HYPDA
MaoC domain protein dehydratase {ECO:0000313|EMBL:ADJ22382.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_expt_1000_bf_scaffold_6338_curated_9
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10723..11094
DNA (372bp) protein (124aa)
Acyl carrier protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0AZY1_9RHIZ
acyl carrier protein
Acyl carrier protein {ECO:0000313|EMBL:AGK56759.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_expt_1000_bf_scaffold_6338_curated_10
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11107..11574
DNA (468bp) protein (156aa)
3-hydroxyacyl-ACP dehydratase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SBE3_9RHIZ
3-hydroxyacyl-ACP dehydratase {ECO:0000313|EMBL:AHB48231.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ
SCNpilot_expt_1000_bf_scaffold_6338_curated_11
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11576..12805
DNA (1230bp) protein (410aa)
3-oxoacyl-(acyl carrier protein) synthase II (EC:2.3.1.41)
3-oxoacyl-(Acyl carrier protein) synthase II {ECO:0000313|EMBL:AGK56757.1}; EC=2.3.1.41 {ECO:0000313|EMBL:AGK56757.1};; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
3-oxoacyl-(Acyl carrier protein) synthase II n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B3G3_9RHIZ
SCNpilot_expt_1000_bf_scaffold_6338_curated_12
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12798..13793
DNA (996bp) protein (332aa)
beta-ketoacyl synthase; K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
Beta-ketoacyl synthase n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JSB9_HYPDA
Beta-ketoacyl synthase {ECO:0000313|EMBL:ADJ22378.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
Displaying 12 items

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